View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6500_low_9 (Length: 255)
Name: NF6500_low_9
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 48951782 - 48951560
Alignment:
| Q |
20 |
gtcttgttctataggagaaggcccacttctcagtaattgcaggtcatcctttgcaaagatatcactctactgagcacctgtattagataaattattaaat |
119 |
Q |
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| T |
48951782 |
gtcttgttctataggagaaggctcacttctcagtaattgcaggtcatcctttgcaaagatatcactctactgagcacctgtattagataaattattaaat |
48951683 |
T |
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| Q |
120 |
agatgaatgtctgatatgaacagtagtagtgcccagctgattacaaaccttctaggataaatgagccaacagggtctaattcacctgactcaaggggctc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
48951682 |
agatgaatgtctgatatgaacagtagtagtgcccagctgattacaaaccttctaggataaatgagccaacagggtctaattcaggtgactcaagcggctc |
48951583 |
T |
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| Q |
220 |
gtccgaaccaacttggctgacct |
242 |
Q |
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| T |
48951582 |
gtccgaaccaacttggctgacct |
48951560 |
T |
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