View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_high_1 (Length: 712)
Name: NF6501_high_1
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 47562027 - 47561727
Alignment:
| Q |
11 |
cagagagaacagaccactgcagactacagagtgcacagaaagacactgaagaaaaataggacaaatgccagcactgggaaaagcacagaatgagaaggaa |
110 |
Q |
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| T |
47562027 |
cagagagaacagaccactgcagactacagagtgcacagaaagacactgaagaaaaataggacaaatgccagcactgggaaaagcacagaatgagaaggaa |
47561928 |
T |
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| Q |
111 |
ggatatatggaattaatttattaaataataattactttatgcattattcatatcatatcatatgatatgacttcaattttttcaattatatatttactag |
210 |
Q |
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| T |
47561927 |
ggatatatggaattaatttattaaataataattactttatgcattattcatatc-----atatgatatgacttcaatttttttaattatatatttactag |
47561833 |
T |
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| Q |
211 |
ttaccatatatatggcatgcaatgcatagtgataattgcatgaattggaaatttggtcccacgtaagctatcttccaaatcagcactggatgacatggcc |
310 |
Q |
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| T |
47561832 |
ttaccatatatatggcatgcaatgcatagtgataattgcatgaattggaaatttggtcccacgtaagctatcttccaaatcagcaatggatgacatggcc |
47561733 |
T |
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| Q |
311 |
catacc |
316 |
Q |
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|||||| |
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| T |
47561732 |
catacc |
47561727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 377 - 696
Target Start/End: Complemental strand, 47561686 - 47561380
Alignment:
| Q |
377 |
caaatcactcctcactgtcaattttgtatgcttgacaaagtcaggtgcacgagcacccaaggcatctaatgatatgtgatggtacggatattataccata |
476 |
Q |
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| T |
47561686 |
caaatcactcctcactgtcaattttgtatgcttgacaaagtcaggtgcacgagcacccaaggcatctaatgatatgtgatggtacggatattataccata |
47561587 |
T |
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| Q |
477 |
ccactatcgtatcaatcttaattttaacctttgccatcttctctctcactattctcaaatgtcaaacacaacagagaaaactgtacaaatgctttttctt |
576 |
Q |
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| T |
47561586 |
ccactatcgtatcaatcttaattttaacctttgccatcttctc-------------aaatgtcaaacacaacagagaaaactgtacaaatgctttttctt |
47561500 |
T |
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| Q |
577 |
gcacaagataaaactttcatcatgtatgatgtatgatttgttaacttaaccttatatgtacggaacctattgataagtatatttgaatttcattctctat |
676 |
Q |
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| T |
47561499 |
gcacaagataaaactttcatcatgtatgatgtatgatttattaacttaaccgtatatgtacggaacctattgataagtatatttgaatttcattctctat |
47561400 |
T |
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| Q |
677 |
gacttggtaagatgatgttg |
696 |
Q |
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| T |
47561399 |
gacttggtaagatgatgttg |
47561380 |
T |
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