View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_high_11 (Length: 342)
Name: NF6501_high_11
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 28940732 - 28940414
Alignment:
| Q |
16 |
ctaatgattacacatttcttattggtgattggtacaagattgatcacacggtaatgactcaaatttgcttcatgcataatttaatatagtatccgagaaa |
115 |
Q |
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| T |
28940732 |
ctaatgattacacatttcttattggtgattggtacaagattgatcacacggtaatgactcaattttgcttcatgcataatttaatatagtatccgagaaa |
28940633 |
T |
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| Q |
116 |
tataaaattacttattagtctcgaagaaaaataaatctagataatttagtccctagctaaacatcgtcatgtctccaatttagttcacccatggcttaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28940632 |
tataaaattacttattagtctcgaagaaaaataaatctagataatttagtccctagctaaacatcgtcacgtctccaatttagttcacccatggcttaaa |
28940533 |
T |
|
| Q |
216 |
ttgttccgatttatttttagtcttataatttttattaacatgtgattatatgaatttcagaagctgaggaaagttctagattttggacacaaacttccac |
315 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940532 |
ttgttccgatttatttt--gtcttataatttttattaacatgtgattatatgaatttcagaagctgaggaaagttctagattttggacacaaacttccac |
28940435 |
T |
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| Q |
316 |
tccctcaagctgttcttatca |
336 |
Q |
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||||||||||||||||||||| |
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| T |
28940434 |
tccctcaagctgttcttatca |
28940414 |
T |
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