View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6501_high_15 (Length: 248)

Name: NF6501_high_15
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6501_high_15
NF6501_high_15
[»] chr1 (6 HSPs)
chr1 (19-163)||(7608009-7608155)
chr1 (19-163)||(31770997-31771143)
chr1 (158-229)||(7608224-7608295)
chr1 (158-229)||(31771212-31771283)
chr1 (183-225)||(7608318-7608360)
chr1 (187-229)||(31771310-31771352)
[»] scaffold0003 (3 HSPs)
scaffold0003 (19-122)||(36689-36794)
scaffold0003 (19-122)||(42868-42976)
scaffold0003 (121-160)||(36837-36876)
[»] chr6 (1 HSPs)
chr6 (19-122)||(27444385-27444493)
[»] chr3 (10 HSPs)
chr3 (19-93)||(31688156-31688231)
chr3 (19-93)||(31896636-31896711)
chr3 (19-93)||(31912345-31912420)
chr3 (19-93)||(31945993-31946068)
chr3 (120-160)||(31688056-31688096)
chr3 (120-160)||(31896771-31896811)
chr3 (120-160)||(31912480-31912520)
chr3 (22-61)||(952782-952821)
chr3 (89-122)||(52131084-52131117)
chr3 (120-160)||(31946128-31946168)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 7608009 - 7608155
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaagga 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  7608009 gcatttactttagagggtcgaaatgaaggcaaaagaagaagaaaggattttgtgtgtttttgaagaagatgaggaatcgtagagagatggagagaaagga 7608108  T
Q  117 gggttattggaaaccaataacattaattatttgtcatttacaataca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7608109 gggttattggaaaccaataacattaattatttgtcatttacaataca 7608155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 31770997 - 31771143
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaagga 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||    
T  31770997 gcatttactttagaaggtcgaaatgaaggcagaagaagaagaaatgattttgtgtgtttttgaagaagatgaggaatcgtagagagatgaagagaaagga 31771096  T
Q  117 gggttattggaaaccaataacattaattatttgtcatttacaataca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31771097 gggttattggaaaccaataacattaattatttgtcatttacaataca 31771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 7608224 - 7608295
Alignment:
Q  158 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggttt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608224 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggttt 7608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 31771212 - 31771283
Alignment:
Q  158 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggttt 229  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31771212 aatacaattaattttgtcacgtaagaaaggaggaaaaactggcaaacagattagatccaagggctgaggttt 31771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 7608318 - 7608360
Alignment:
Q  183 aaaggaggaaaaaatggcaaacagattagatccaagggctgag 225  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  7608318 aaaggaggaaaaaattgcaaacagattagatccaagggctgag 7608360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 31771310 - 31771352
Alignment:
Q  187 gaggaaaaaatggcaaacagattagatccaagggctgaggttt 229  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  31771310 gaggaaaaaattgcaaacagattagatccaagggctgaggttt 31771352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 36689 - 36794
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaagga 116  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  36689 gcatttactttagagggtcgaaatgaaggcagaagaagaaaaagggattttgtgtgtttttgaagaagatgaggaatcgtagagagatggagagaaagga 36788  T
Q  117 gggtta 122  Q
    ||||||    
T  36789 gggtta 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 42868 - 42976
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaa---ggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||||||| | |||||||||||||||||||||||||||    
T  42868 gcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgtagagagatggagagaaa 42967  T
Q  114 ggagggtta 122  Q
    |||||||||    
T  42968 ggagggtta 42976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 36837 - 36876
Alignment:
Q  121 tattggaaaccaataacattaattatttgtcatttacaat 160  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36837 tattggaaaccgataacattaattatttgtcatttacaat 36876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 27444493 - 27444385
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaa---ggattttgtgt--ttttgaagaaaatgaggaatcgtagagagatggagagaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||  |||||||||| | |||||||||||||||||||||||||||    
T  27444493 gcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgtagagagatggagagaaa 27444394  T
Q  114 ggagggtta 122  Q
    |||||||||    
T  27444393 ggagggtta 27444385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 31688231 - 31688156
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||||    
T  31688231 gcatttactttagagggtcgaaatgaaggcagaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31688156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31896636 - 31896711
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||||    
T  31896636 gcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31896711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31912345 - 31912420
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||||    
T  31912345 gcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31912420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31945993 - 31946068
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||||    
T  31945993 gcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31946068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 31688096 - 31688056
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31688096 ttattggaaaccgataacattaattatttgtcatttacaat 31688056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 31896771 - 31896811
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31896771 ttattggaaatcgataacattaattatttgtcatttacaat 31896811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 31912480 - 31912520
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31912480 ttattggaaatcgataacattaattatttgtcatttacaat 31912520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 952782 - 952821
Alignment:
Q  22 tttactttagagggtcgaaatgaaggcagaagaagaagaa 61  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  952782 tttactttagaggattgaaatgaaggcagaagaagaagaa 952821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 52131117 - 52131084
Alignment:
Q  89 ggaatcgtagagagatggagagaaaggagggtta 122  Q
    ||||||||||||||||||||||| ||||||||||    
T  52131117 ggaatcgtagagagatggagagagaggagggtta 52131084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 31946128 - 31946168
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  31946128 ttattggaaatcgataacattcattatttgtcatttacaat 31946168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University