View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_high_2 (Length: 657)
Name: NF6501_high_2
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 323 - 641
Target Start/End: Complemental strand, 35041390 - 35041073
Alignment:
| Q |
323 |
attgctaattctaattccaattcattttcgtatttccaaagacacattcgggtaccatcatgtttatttaagccagctaaaatgaacaaattgtattcta |
422 |
Q |
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| T |
35041390 |
attgctaattctaattccaattcattttcgtatttccaaagacacattcgggtaccatcatgtttatttaagccagctaaaatgaacaaattgtattcta |
35041291 |
T |
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| Q |
423 |
ccacaattaaatatttccctgttcatgcagaagaacaaacaccttgtgggcataaatgctcaataagaaggataaaaccaaatcaatgggatgatattca |
522 |
Q |
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| T |
35041290 |
caacaattaaatattttcctgttcatgcagaagaacaaacaccttgtgggcataaatgctcaataagaaggataaaaccaaatcaatgggatgatattca |
35041191 |
T |
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| Q |
523 |
ttcttgtctattataaaatgagctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcctttaaa |
622 |
Q |
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| T |
35041190 |
ttcttgtctattataaaatgagctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcctttaaa |
35041092 |
T |
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| Q |
623 |
ctgtccagtatgtgtcgtg |
641 |
Q |
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| T |
35041091 |
ctgtccagtatgtgtcgtg |
35041073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 35042239 - 35042079
Alignment:
| Q |
11 |
cacagaaaatacgaatcacaaagtgtctcttttgtcattgtctattggattaattttgtttccatcgtttgcttgggttgatcttgaaacgtctcttttg |
110 |
Q |
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| T |
35042239 |
cacaaaaaacacgaatcacaaagtgtctcttttgtcattgtctattggattaattttgtttccatcgtttgcttgggttgatcttgaaacgtctcttttg |
35042140 |
T |
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| Q |
111 |
ttcttgttggctggatattatttttcgtactccaaatgagacggttaattaacaaatttta |
171 |
Q |
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| T |
35042139 |
ttcttgttggctggatattatttttcgtactccaaatgagacggttaattaacaaatttta |
35042079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 35042096 - 35042002
Alignment:
| Q |
188 |
gttaattaacaaattttaaagaagaggaaaacgtcgaagtattttctgagaatattttaatttttcaaattttgggatatgatttataattatct |
282 |
Q |
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| T |
35042096 |
gttaattaacaaattttaaagaagaggaaaacgtcgaagtattttttgagaatattttaatttttcaaattttgggatatgatttataattatct |
35042002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 35041951 - 35041902
Alignment:
| Q |
282 |
ttttagttcattgggaattccatttaatatgaaaatttgttattgctaat |
331 |
Q |
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| T |
35041951 |
ttttagttcattgggaattccatttaatatgaaaaattgttattgctaat |
35041902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 542 - 616
Target Start/End: Complemental strand, 31178358 - 31178285
Alignment:
| Q |
542 |
gagctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcc |
616 |
Q |
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| T |
31178358 |
gagctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcc |
31178285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 542 - 616
Target Start/End: Complemental strand, 31178870 - 31178797
Alignment:
| Q |
542 |
gagctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcc |
616 |
Q |
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| T |
31178870 |
gagctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcc |
31178797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 542 - 616
Target Start/End: Complemental strand, 31179382 - 31179309
Alignment:
| Q |
542 |
gagctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcc |
616 |
Q |
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| T |
31179382 |
gagctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcc |
31179309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 623
Target Start/End: Complemental strand, 33854967 - 33854886
Alignment:
| Q |
542 |
gagctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcctttaaac |
623 |
Q |
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|||||||||||||||||||| | |||||| ||||| |||||||||||| | || ||||||||||| |||| |||||| |||| |
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| T |
33854967 |
gagctatgctaaatgttacggtggaattttcctacaaaatgcaagaattgatatgtgtcaactttccatatagccttgaaac |
33854886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 637
Target Start/End: Original strand, 52171404 - 52171499
Alignment:
| Q |
542 |
gagctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcctttaaactgtccagtatgtgt |
637 |
Q |
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| T |
52171404 |
gagctatgctaaatgttacgatggagtttgcatacgaaacgcaagaataggaccacgtcagctttccgtaaatccttgaaacagttcagtatgtgt |
52171499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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