View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6501_high_3 (Length: 656)

Name: NF6501_high_3
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6501_high_3
NF6501_high_3
[»] chr5 (1 HSPs)
chr5 (8-637)||(9799512-9800142)


Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Original strand, 9799512 - 9800142
Alignment:
Q  8 gacatcatcatttcactatgagagtggtggctttctatttaagaatcatacccacttccacatcaatccactatacaaatggacatagagagcaaccaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  9799512 gacatcatcatttcactatgagagtggtggctttctatttaagaatcatacccacttccacatcaatccactatacaaatggacataaagagaaaccaaa 9799611  T
Q  108 gtcaagaaataatgaaactcacaccatcacaagatgttcgtgtttcttttgtatgaactcacaagattgttttgttgtgtccactttcacagtgacaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799612 gtcaagaaataatgaaactcacaccatcacaagatgttcgtgtttcttttgtatgaactcacaagattgttttgttgtgtccactttcacagtgacaatt 9799711  T
Q  208 atcttcttcttatttgtaccaaaatttctcacatgttttcagtggctataaatcatttccaattgtccctcttgtcccgtacaaataatttgaagnnnnn 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  9799712 atcttcttcttatttgtaccaaaatttctcacatgttttcagtggctataaatcatttccaattgtccctcttgtcccgtacaaataatttgaagaaaaa 9799811  T
Q  308 nngacaagaagtcggccaaaatatccaacttgtgaggagtgtgatttgttaatcagtgaaccatatttttcaataccatatctatataccattaagtatt 407  Q
      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799812 aagacaagaagtcggccaaaatatccaacttgtgaggagtgtgattggttaatcagtgaaccatatttttcaataccatatctatataccattaagtatt 9799911  T
Q  408 aaccttgcctttttgagtnnnnnnnnctttttgaaatttatttgcatcttccc-ttgattaacttctccactttcctttagtgccttgtccattttctcc 506  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9799912 aaccttgcctttttgagtaaaaaaaactttttgaaatttatttgcatcttccctttgattaacttctccactttcctttagtgccttgtccattttctcc 9800011  T
Q  507 acaatgcttaaactctttctttgttccaacttttggttcctttttcattcacaattctaagctactggttaaagtacatcatatatcctttctgaagcta 606  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9800012 acaatgcttaaactctttctttgttcctacttttggttccttcttcattcacaattctaagctactggttaaattacatcatatatcctttctgaagcta 9800111  T
Q  607 gacggtatgtctttcaacttcatgaagttac 637  Q
    || ||||||||||||||||||||||||||||    
T  9800112 gaaggtatgtctttcaacttcatgaagttac 9800142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University