View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6501_low_10 (Length: 383)
Name: NF6501_low_10
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 3500283 - 3500638
Alignment:
| Q |
13 |
catcaagcaaatcaacggaaatatttccatatatgagcgtactcaactcttgttagaggatctcaatttcctcagctgtctagattgtatcatttatatt |
112 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500283 |
catcaaggaaatcaacagaaatatttccatatatgagcgtactcaactcttgttagaggatctcaatttcctcagctgtctagattgtatcatttatatt |
3500382 |
T |
|
| Q |
113 |
caattcagcttatttcttattttaccaatattatacaaataaggtgttatgattattatcatgatttaacttatatagtcatcatgaagatcctggacat |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500383 |
caattcagcttatttcttattttatcaatattatataaataaggtgttatgattattatcatgatttaacttatatagtcatcatgaagatcctggacat |
3500482 |
T |
|
| Q |
213 |
tactgttgaaatcaattattctgcccctctggttgtgaaacagcaatttcataaagatttgattacaacttgaaaaggagtcaatctaacatctaatgct |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3500483 |
tactgttgaaatcaattatactgcccctctggttgtgaaacagcaatttcataaagatttgattacaacttgaaaaggggtcaatctaacatctaatgct |
3500582 |
T |
|
| Q |
313 |
tattagctatatcctccaaaggttcaattcaatatatgagtgccaaaaattcttaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500583 |
tattagctatatcctccaaaggttcaattcaatatatgagtgccaaaaattcttaa |
3500638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 3512801 - 3513000
Alignment:
| Q |
164 |
attattatcatgatttaacttatatagtcatcatgaagatcctggacattactgttgaaatcaattattctgcccctctggttgtgaaacagcaatttca |
263 |
Q |
| |
|
|||||||| ||||| |||| |||||| |||||||||||||||| ||| |||||||||||||||||||| | |||||| |||| |||| |||||| |
|
|
| T |
3512801 |
attattattatgatgtaacatatatactcatcatgaagatcctagactttactgttgaaatcaattatattacccctccagttgcgaaa-----atttca |
3512895 |
T |
|
| Q |
264 |
taaagatttgattacaacttgaaaaggagtcaatctaacatctaatgcttattagctatatcctccaaaggttcaattcaatatatgagtgccaaaaatt |
363 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3512896 |
taaagatttgattagaacttgaaaaggagtctatctgacatctgatgcttattggctatatcctccaaaggttcaattcaaaatatgagtgccaaaaatt |
3512995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 3512679 - 3512768
Alignment:
| Q |
66 |
tagaggatctcaatttcctcagctgtctagattgtatcatttatattcaattcagcttatttcttattttaccaatattatacaaataag |
155 |
Q |
| |
|
|||||||||||||||||||| | | |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3512679 |
tagaggatctcaatttcctcggttttctaaattgtattatttatattcaattcagcttatttcttattttaccaataatatacaaataag |
3512768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 3512588 - 3512624
Alignment:
| Q |
13 |
catcaagcaaatcaacggaaatatttccatatatgag |
49 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
3512588 |
catcaagcaaatcaacggagatatttccataaatgag |
3512624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 2352881 - 2352844
Alignment:
| Q |
13 |
catcaagcaaatcaacggaaatatttccatatatgagc |
50 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2352881 |
catcaagcaaatcaacggagatatttccataaatgagc |
2352844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University