View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6501_low_11 (Length: 382)

Name: NF6501_low_11
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6501_low_11
NF6501_low_11
[»] chr1 (10 HSPs)
chr1 (19-163)||(7608009-7608155)
chr1 (19-163)||(31770997-31771143)
chr1 (187-305)||(31771310-31771428)
chr1 (183-305)||(7608318-7608440)
chr1 (158-251)||(7608224-7608317)
chr1 (158-251)||(31771212-31771305)
chr1 (248-305)||(1721556-1721613)
chr1 (248-315)||(17726023-17726089)
chr1 (261-306)||(32440659-32440704)
chr1 (248-306)||(22368196-22368254)
[»] scaffold0003 (5 HSPs)
scaffold0003 (19-122)||(36689-36794)
scaffold0003 (19-122)||(42868-42976)
scaffold0003 (209-305)||(36966-37062)
scaffold0003 (270-310)||(43199-43239)
scaffold0003 (121-160)||(36837-36876)
[»] chr6 (4 HSPs)
chr6 (19-122)||(27444385-27444493)
chr6 (271-316)||(31444760-31444805)
chr6 (270-310)||(27444122-27444162)
chr6 (263-311)||(33054175-33054223)
[»] scaffold0152 (1 HSPs)
scaffold0152 (209-305)||(10195-10291)
[»] chr3 (16 HSPs)
chr3 (231-310)||(19766009-19766088)
chr3 (19-93)||(31688156-31688231)
chr3 (318-372)||(11427105-11427159)
chr3 (19-93)||(31896636-31896711)
chr3 (19-93)||(31912345-31912420)
chr3 (19-93)||(31945993-31946068)
chr3 (261-316)||(11394007-11394062)
chr3 (209-294)||(31687881-31687966)
chr3 (120-160)||(31688056-31688096)
chr3 (261-305)||(46233973-46234017)
chr3 (120-160)||(31896771-31896811)
chr3 (120-160)||(31912480-31912520)
chr3 (22-61)||(952782-952821)
chr3 (248-311)||(52130783-52130846)
chr3 (89-122)||(52131084-52131117)
chr3 (120-160)||(31946128-31946168)
[»] chr2 (5 HSPs)
chr2 (248-319)||(997806-997877)
chr2 (231-306)||(4453777-4453852)
chr2 (261-306)||(9208569-9208614)
chr2 (271-310)||(7161811-7161850)
chr2 (252-315)||(3625169-3625234)
[»] chr4 (5 HSPs)
chr4 (248-315)||(32651267-32651334)
chr4 (231-315)||(38467690-38467775)
chr4 (231-303)||(3649873-3649945)
chr4 (250-313)||(41810163-41810226)
chr4 (270-305)||(26720237-26720272)
[»] scaffold0014 (1 HSPs)
scaffold0014 (270-312)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (231-305)||(44663663-44663737)
chr8 (231-305)||(35348991-35349066)
[»] chr7 (2 HSPs)
chr7 (261-310)||(16262692-16262741)
chr7 (263-305)||(21820186-21820228)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 7608009 - 7608155
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaagga 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  7608009 gcatttactttagagggtcgaaatgaaggcaaaagaagaagaaaggattttgtgtgtttttgaagaagatgaggaatcgtagagagatggagagaaagga 7608108  T
Q  117 gggttattggaaaccaataacattaattatttgtcatttacaataca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7608109 gggttattggaaaccaataacattaattatttgtcatttacaataca 7608155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 31770997 - 31771143
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaagga 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||    
T  31770997 gcatttactttagaaggtcgaaatgaaggcagaagaagaagaaatgattttgtgtgtttttgaagaagatgaggaatcgtagagagatgaagagaaagga 31771096  T
Q  117 gggttattggaaaccaataacattaattatttgtcatttacaataca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31771097 gggttattggaaaccaataacattaattatttgtcatttacaataca 31771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 31771310 - 31771428
Alignment:
Q  187 gaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactag 286  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31771310 gaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagtgttaactag 31771409  T
Q  287 gattaggaataagttagat 305  Q
    |||||||||||||||||||    
T  31771410 gattaggaataagttagat 31771428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 7608318 - 7608440
Alignment:
Q  183 aaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaa 282  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7608318 aaaggaggaaaaaattgcaaacagattagatccaagggctgagatttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagttttaa 7608417  T
Q  283 ctaggattaggaataagttagat 305  Q
    |||||||||||||||||||||||    
T  7608418 ctaggattaggaataagttagat 7608440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 7608224 - 7608317
Alignment:
Q  158 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  7608224 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 7608317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 31771212 - 31771305
Alignment:
Q  158 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaa 251  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  31771212 aatacaattaattttgtcacgtaagaaaggaggaaaaactggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 31771305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 1721613 - 1721556
Alignment:
Q  248 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    |||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||    
T  1721613 agaattagggttggcagcgttaattggagtgttaattaggattaggaataagttagat 1721556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 17726089 - 17726023
Alignment:
Q  248 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 315  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||| ||||||||||||||||    
T  17726089 agaattagggttttaagtgataattggagtgttaactaggattaggaataa-ttagattagattagat 17726023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 32440659 - 32440704
Alignment:
Q  261 ggagtgttatttggagtgttaactaggattaggaataagttagatt 306  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  32440659 ggagtgataattggagtgttaactaggattaggaataagttagatt 32440704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 22368196 - 22368254
Alignment:
Q  248 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatt 306  Q
    ||||||||||||   |||| || ||| ||||||||||||||||||||||||||||||||    
T  22368196 agaattagggttttaagtgataattgaagtgttaactaggattaggaataagttagatt 22368254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 36689 - 36794
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaagga 116  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  36689 gcatttactttagagggtcgaaatgaaggcagaagaagaaaaagggattttgtgtgtttttgaagaagatgaggaatcgtagagagatggagagaaagga 36788  T
Q  117 gggtta 122  Q
    ||||||    
T  36789 gggtta 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 42868 - 42976
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaa---ggattttgtg--tttttgaagaaaatgaggaatcgtagagagatggagagaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||||||| | |||||||||||||||||||||||||||    
T  42868 gcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgtagagagatggagagaaa 42967  T
Q  114 ggagggtta 122  Q
    |||||||||    
T  42968 ggagggtta 42976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 36966 - 37062
Alignment:
Q  209 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    |||||||||||||| ||| ||||| ||| ||||||| || ||||||||| || | ||||||| |||||||||||| ||||||||||||||||||||||    
T  36966 tagatccaagggct-aggattgtttggcgcctaaaaaagaagaattaggatttgaagtgttaattggagtgttaattaggattaggaataagttagat 37062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 43199 - 43239
Alignment:
Q  270 tttggagtgttaactaggattaggaataagttagattagat 310  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43199 tttggagtgttaactacgattaggaataagttagattagat 43239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 36837 - 36876
Alignment:
Q  121 tattggaaaccaataacattaattatttgtcatttacaat 160  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36837 tattggaaaccgataacattaattatttgtcatttacaat 36876  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 27444493 - 27444385
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaa---ggattttgtgt--ttttgaagaaaatgaggaatcgtagagagatggagagaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||  |||||||||| | |||||||||||||||||||||||||||    
T  27444493 gcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgtagagagatggagagaaa 27444394  T
Q  114 ggagggtta 122  Q
    |||||||||    
T  27444393 ggagggtta 27444385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 31444805 - 31444760
Alignment:
Q  271 ttggagtgttaactaggattaggaataagttagattagattagata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444805 ttggagtgttaactaggattaggaataagttagattagattagata 31444760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 27444162 - 27444122
Alignment:
Q  270 tttggagtgttaactaggattaggaataagttagattagat 310  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27444162 tttggagtgttaactacgattaggaataagttagattagat 27444122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 33054175 - 33054223
Alignment:
Q  263 agtgttatttggagtgttaactaggattaggaataagttagattagatt 311  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  33054175 agtgttaattgtagtgttaattaggattaggaataagttagattagatt 33054223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 10291 - 10195
Alignment:
Q  209 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    |||||||||||||| ||| ||||| ||| ||||||| || |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  10291 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaattggagtgttaactaggattgggaataagttagat 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 19766088 - 19766009
Alignment:
Q  231 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagat 310  Q
    ||||| ||||||| || || ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19766088 ttggcgcctaaaaaagtaggattagggtttggagtgttaattggagtgttaactaggattagaaataagttagattagat 19766009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 31688231 - 31688156
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||||    
T  31688231 gcatttactttagagggtcgaaatgaaggcagaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31688156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 11427105 - 11427159
Alignment:
Q  318 attacctgattgcaaaatgtaattagttttgcatcttgatactatgaaaatgatg 372  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  11427105 attacctgattgcaaaatataattagttttgcatcttgataccatgaaaatgatg 11427159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31896636 - 31896711
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||||    
T  31896636 gcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31896711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31912345 - 31912420
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||||    
T  31912345 gcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31912420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31945993 - 31946068
Alignment:
Q  19 gcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 93  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||||    
T  31945993 gcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31946068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 11394062 - 11394007
Alignment:
Q  261 ggagtgttatttggagtgttaactaggattaggaataagttagattagattagata 316  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  11394062 ggagtgataattggagtgttaactaggattagaaataagttagattagattagata 11394007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 31687966 - 31687881
Alignment:
Q  209 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattagga 294  Q
    |||||||||||||| ||| ||||| ||| ||||||| || |||||||||||| ||||||| | |||||||||||||||||| |||||    
T  31687966 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgtaagttggagtgttaactaggactagga 31687881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 31688096 - 31688056
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31688096 ttattggaaaccgataacattaattatttgtcatttacaat 31688056  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 46233973 - 46234017
Alignment:
Q  261 ggagtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  46233973 ggagtgataattggagtgttaactaggattaggaataagttagat 46234017  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 31896771 - 31896811
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31896771 ttattggaaatcgataacattaattatttgtcatttacaat 31896811  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 31912480 - 31912520
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31912480 ttattggaaatcgataacattaattatttgtcatttacaat 31912520  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 952782 - 952821
Alignment:
Q  22 tttactttagagggtcgaaatgaaggcagaagaagaagaa 61  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  952782 tttactttagaggattgaaatgaaggcagaagaagaagaa 952821  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 52130846 - 52130783
Alignment:
Q  248 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagatt 311  Q
    ||||||||||||   |||| || ||||||||||| |||||||||| ||||||||||| ||||||    
T  52130846 agaattagggttttaagtggtaattggagtgttacctaggattagaaataagttagactagatt 52130783  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 52131117 - 52131084
Alignment:
Q  89 ggaatcgtagagagatggagagaaaggagggtta 122  Q
    ||||||||||||||||||||||| ||||||||||    
T  52131117 ggaatcgtagagagatggagagagaggagggtta 52131084  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 31946128 - 31946168
Alignment:
Q  120 ttattggaaaccaataacattaattatttgtcatttacaat 160  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  31946128 ttattggaaatcgataacattcattatttgtcatttacaat 31946168  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 997877 - 997806
Alignment:
Q  248 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagatagat 319  Q
    |||||||||||||| || | || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  997877 agaattagggttggcagggctaattgaagtgttaactaggattaggaataagttagattagattagatagat 997806  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 4453852 - 4453777
Alignment:
Q  231 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatt 306  Q
    ||||| ||||||||   ||||||||||||   |||| || ||||||||||||||||||||||||||||||||||||    
T  4453852 ttggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttagatt 4453777  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 9208614 - 9208569
Alignment:
Q  261 ggagtgttatttggagtgttaactaggattaggaataagttagatt 306  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  9208614 ggagtgataattggagtgttaactaggattaggaataagttagatt 9208569  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 7161850 - 7161811
Alignment:
Q  271 ttggagtgttaactaggattaggaataagttagattagat 310  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  7161850 ttggagtgttaactaggattagaaataagttagattagat 7161811  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 3625234 - 3625169
Alignment:
Q  252 ttagggttgggagtgttatttggagtgttaactaggattaggaataagttaga--ttagattagat 315  Q
    |||||||||| |  |||| |||||||||||| |||||||||||||||||||||  |||||||||||    
T  3625234 ttagggttggcatggttaattggagtgttaattaggattaggaataagttagaagttagattagat 3625169  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 32651267 - 32651334
Alignment:
Q  248 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 315  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  32651267 agaattagggttttaagtgataattggagtgttaactaggattaggaataagttagattagattagat 32651334  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 38467690 - 38467775
Alignment:
Q  231 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 315  Q
    ||||| ||||||||| | ||||||||||||   ||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  38467690 ttggcgcctaaaataagtagaattagggttttaagtgttaattggagtgttaactaggattataaataagttagattagattagat 38467775  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 3649945 - 3649873
Alignment:
Q  231 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttag 303  Q
    ||||| ||||||| || ||| ||||||||   ||||||| |||||||||||||||||||||||||||||||||    
T  3649945 ttggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactaggattaggaataagttag 3649873  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 41810226 - 41810163
Alignment:
Q  250 aattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattag 313  Q
    ||||||||||   |||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  41810226 aattagggttttaagtggtaattggagtgttaactaggattagaaataagttagattagattag 41810163  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 305
Target Start/End: Complemental strand, 26720272 - 26720237
Alignment:
Q  270 tttggagtgttaactaggattaggaataagttagat 305  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720272 tttggagtgttaactaggattaggaataagttagat 26720237  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 32650 - 32608
Alignment:
Q  270 tttggagtgttaactaggattaggaataagttagattagatta 312  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  32650 tttggagtgttaactaggattagaaataagttagattagatta 32608  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 44663663 - 44663737
Alignment:
Q  231 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    ||||| ||||||||   ||||||||||||   |||| || |||||||||||||||||||||||||||||||||||    
T  44663663 ttggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttagat 44663737  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 35349066 - 35348991
Alignment:
Q  231 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    ||||| ||||||||| | ||||||||| ||   ||||||| |||||||||||||||||||||| ||||||||||||    
T  35349066 ttggcgcctaaaataagtagaattaggattttaagtgttaattggagtgttaactaggattagaaataagttagat 35348991  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 16262692 - 16262741
Alignment:
Q  261 ggagtgttatttggagtgttaactaggattaggaataagttagattagat 310  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  16262692 ggagtgataattgaagtgttaactaggattaggaataagttagattagat 16262741  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 21820186 - 21820228
Alignment:
Q  263 agtgttatttggagtgttaactaggattaggaataagttagat 305  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  21820186 agtgttaattggagtgttaattaggattaggaataagttagat 21820228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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