View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_13 (Length: 373)
Name: NF6501_low_13
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 56312881 - 56313227
Alignment:
| Q |
15 |
acacacgcttgatttccaactaatcatagatccaaagctatagcacaccaaaacaata--gtagctagctgcgtgaaacttgcagccnnnnnnnnnnnnn |
112 |
Q |
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| T |
56312881 |
acacacgcttgatttccatctaatcatagatccaaagctatagcacaccaaaacaatatagtagctagctgcgtgaaacttgcagccatatatatatat- |
56312979 |
T |
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| Q |
113 |
nnntcaaattagttagaagccaagaatgcaagagggagagagtgagcaattaattattacgtgatagaaattaaagaaagaaagagagtacaaattaaac |
212 |
Q |
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| T |
56312980 |
---tcaaattagttagaagccaagaatgcaagagggagagagtgagcaattaattattacgtgatagaaattaaagaaagaaagagagtacaaattaaac |
56313076 |
T |
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| Q |
213 |
agtgcctaaaatatattcatacaacaactatcaccgtttgtgattaatnnnnnnnnnnnnnnnnnncttttctcgcatacatacatacacatgtactatt |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
56313077 |
agtacctaaaatatattcatacaacaactatcaccgtttgtgattaat--tctctctctctctctccttctctcgcatacatacatacacatgtactatt |
56313174 |
T |
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| Q |
313 |
tcatgcatgaatttttaaattctgaccacaaattaattaattcctttcatctc |
365 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56313175 |
tcatgcatgaattttaaaattctgaccacaaattaattaattcctttcatctc |
56313227 |
T |
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