View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_19 (Length: 244)
Name: NF6501_low_19
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1785867 - 1785632
Alignment:
| Q |
1 |
ataggaatttttggacaagaaattttctttaacaaatttccaaatgtcactgaaaaa-agtagc-----acataagcataatattatagcctttatatat |
94 |
Q |
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| T |
1785867 |
atagaaatttttggacaagaaattttctttaacaaatttccaaatgtcactgaagaataataattttatacataagcataatattatagcctttatatat |
1785768 |
T |
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| Q |
95 |
gatatggtatctaatatgagtttttaaaataattttggtcttacctttattttgtagtgaggctaatctgaagaatctaagataaatgatgtatgcagtg |
194 |
Q |
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| T |
1785767 |
gatatggtatctaatatgagtttttaaaataattttggtcttacctttattttgtagtgaggctaatctgaagaatctaagataaatgatgtatgcagtg |
1785668 |
T |
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| Q |
195 |
ataaatgatatcaaaatagcccctactgttgctgct |
230 |
Q |
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| T |
1785667 |
ataaatgatatcaaaatagcccctactgttgctgct |
1785632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1791031 - 1790956
Alignment:
| Q |
1 |
ataggaatttttggacaagaaattttc-tttaacaaatttccaaatgtcactgaaaaaagtagcacataagcataa |
75 |
Q |
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|||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||| |
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| T |
1791031 |
ataggaatttttggacaagaaatttttgtttaataagtttccaaatgtcactgagaaaagtagtacataagcataa |
1790956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 1790749 - 1790674
Alignment:
| Q |
121 |
aaataattttggtcttacctttattttgtagtgaggctaatctgaagaatctaagataaatgatgtatgcagtgat |
196 |
Q |
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||||||||||| ||||||| | ||||| ||||| |||| | || ||| || |||||||||||||||||||| |||| |
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| T |
1790749 |
aaataattttgatcttaccctcattttttagtggggctgaactaaagcatataagataaatgatgtatgcaatgat |
1790674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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