View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_4 (Length: 585)
Name: NF6501_low_4
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 169 - 448
Target Start/End: Complemental strand, 27474124 - 27473845
Alignment:
| Q |
169 |
ggtttcaagattttgttttctttccattatgctattattgattaaggaaaatatagattctggttcttcttcatctcaaagatagtaatagcacgtcaaa |
268 |
Q |
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| T |
27474124 |
ggtttcaagattttgttttctttccattatgctattattgactaaggaaaatatagattttggttcttcttcatctcaaagatagtaatagtacgtcaaa |
27474025 |
T |
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| Q |
269 |
aatttttgatagaagtatcaagaatttgatgaatcgttccattttgtttttctctctatttcatatgaacctttttgttttgagtgaatctttgttaaag |
368 |
Q |
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| T |
27474024 |
aaaatttgatagaaggatcaagaatttgatgaatcgttccattttgtttttctctctatttcatatgaacctttttgttttgaatgaatctttgttaaag |
27473925 |
T |
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| Q |
369 |
aaattagttattttggattgagattttgggagagattgtatttaaaatatttcattaaaatggttagtgtttgaaccttg |
448 |
Q |
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| T |
27473924 |
aaattagttattttggattgagattttgggagaggttgtatttgaaatatttcattaaaatggttagtgtttgaaccttg |
27473845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 27474280 - 27474191
Alignment:
| Q |
13 |
aaaattagttattctattggtttttacttgtcacattcgtagaaaaaattgatcttctataatttcttatcggtttttaaattgatcttt |
102 |
Q |
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| T |
27474280 |
aaaattagctattctattggtttttacttgtcacttttgtagaaaaaattcatcttctataatttcttatcggtttttaaattgatcttt |
27474191 |
T |
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