View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_5 (Length: 536)
Name: NF6501_low_5
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 323 - 519
Target Start/End: Complemental strand, 35041390 - 35041194
Alignment:
| Q |
323 |
attgctaattctaattccaattcattttcgtatttccaaagacacattcgggtaccatcatgtttatttaagccagctaaaatgaacaaattgtattcta |
422 |
Q |
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| T |
35041390 |
attgctaattctaattccaattcattttcgtatttccaaagacacattcgggtaccatcatgtttatttaagccagctaaaatgaacaaattgtattcta |
35041291 |
T |
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| Q |
423 |
ccacaattaaatatttccctgttcatgcagaagaacaaacaccttgtgggcataaatgctcaataagaaggataaaaccaaatcaatgggatgatat |
519 |
Q |
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| T |
35041290 |
caacaattaaatattttcctgttcatgcagaagaacaaacaccttgtgggcataaatgctcaataagaaggataaaaccaaatcaatgggatgatat |
35041194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 35042239 - 35042079
Alignment:
| Q |
11 |
cacagaaaatacgaatcacaaagtgtctcttttgtcattgtctattggattaattttgtttccatcgtttgcttgggttgatcttgaaacgtctcttttg |
110 |
Q |
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| T |
35042239 |
cacaaaaaacacgaatcacaaagtgtctcttttgtcattgtctattggattaattttgtttccatcgtttgcttgggttgatcttgaaacgtctcttttg |
35042140 |
T |
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| Q |
111 |
ttcttgttggctggatattatttttcgtactccaaatgagacggttaattaacaaatttta |
171 |
Q |
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| T |
35042139 |
ttcttgttggctggatattatttttcgtactccaaatgagacggttaattaacaaatttta |
35042079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 35042096 - 35042002
Alignment:
| Q |
188 |
gttaattaacaaattttaaagaagaggaaaacgtcgaagtattttctgagaatattttaatttttcaaattttgggatatgatttataattatct |
282 |
Q |
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| T |
35042096 |
gttaattaacaaattttaaagaagaggaaaacgtcgaagtattttttgagaatattttaatttttcaaattttgggatatgatttataattatct |
35042002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 35041951 - 35041902
Alignment:
| Q |
282 |
ttttagttcattgggaattccatttaatatgaaaatttgttattgctaat |
331 |
Q |
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| T |
35041951 |
ttttagttcattgggaattccatttaatatgaaaaattgttattgctaat |
35041902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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