View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_6 (Length: 433)
Name: NF6501_low_6
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 783792 - 784129
Alignment:
| Q |
18 |
aaatcttggtaactaatcacttagaatactattacagatattaaaatttgtcaagaaatgtctttttaaattggtttttcttgtatagatatatgcttct |
117 |
Q |
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| T |
783792 |
aaatcttggtaactaatcacttagaatactattacagatattaaaatttgccaagaaatgtcttt--aaattggtttttcttgtatagatatatgcttct |
783889 |
T |
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| Q |
118 |
tcatgccaagtttcaattttttatgcatttgatgttattgatcacttgttaaatttgtttggaatgaggctgaactgataaacacatgcaaccaattggc |
217 |
Q |
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| T |
783890 |
tcatgccaagtttcaattttttatgcatttgatgttattgatcacttgttaaatttgtttggaatgaggctgaactgataaacacatgcaaccaattggc |
783989 |
T |
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| Q |
218 |
ataaacagctttggtaatatttgattagtatgtactaatcatgtaaaatggtaccaacatcattgatccaattggtagatatctgaatttctaattgaaa |
317 |
Q |
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| T |
783990 |
ataaacagctttggtaatatttgattagtatgtactaatcatgtaaaatggtaccaacatcattgatccaattggtagataactgaatttctaattgaaa |
784089 |
T |
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| Q |
318 |
gaacatctgccaagatgtcaaccttttaaattgatatttt |
357 |
Q |
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| T |
784090 |
gaacatctgccaagatgtcaaccttttaaattgatatttt |
784129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 786698 - 786644
Alignment:
| Q |
350 |
gatattttctagttgaattcctttttgccttgtacaaattttattgagtaataag |
404 |
Q |
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| T |
786698 |
gatattttctagttgaattcctttttgccttgtacaaattttattgagtaataag |
786644 |
T |
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