View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_7 (Length: 423)
Name: NF6501_low_7
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11427159 - 11427380
Alignment:
| Q |
1 |
gtatgctccctaaaatcagcttcaaattaaattagtggtcatcacacaaagataaatattgaatcataccttatattattaattgtcaaagaaaacacgt |
100 |
Q |
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| T |
11427159 |
gtatgctccctaaaatcaccttcaaattaaattagtggtcatcacacaaagataaatattgaatcataccttatattattaattgtcaaagaaaacacgt |
11427258 |
T |
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| Q |
101 |
taatcaaagaaattacattggaagcatcagtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaaagcatgagaaaggtttcactgca |
200 |
Q |
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| T |
11427259 |
taatcaaagaaattacactcgaagcatcggtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaaagcatgagaaaggtttcactaca |
11427358 |
T |
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| Q |
201 |
gctccaacaaaagcagaagatt |
222 |
Q |
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| T |
11427359 |
gctccaacaaaagcagaagatt |
11427380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 264 - 407
Target Start/End: Original strand, 11427422 - 11427573
Alignment:
| Q |
264 |
aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc--------gaattggcaaggaagcgataccaaagagaaaaaa |
355 |
Q |
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| T |
11427422 |
aggagaagcaacgcttagtggaatcgtatacatacctgtaattaaacaatggtggatccatcgatcgaattagcaaggaagcgataccaaagagaaaatc |
11427521 |
T |
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| Q |
356 |
tttgaacactattgacttgtaagacaatcgacttagaatcgttatattcaca |
407 |
Q |
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| T |
11427522 |
tttgaacactattgacttgtaagacgatcgacttagaatcgttatattcaca |
11427573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 11430984 - 11431110
Alignment:
| Q |
89 |
aagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaaagcatgagaaa |
188 |
Q |
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| T |
11430984 |
aagaaaacacgttaatcaaataaattacactcgaagcatcgatcgccaaccacgaaacaaaggacagagaaaagatcatccacaacaaaagcatgagaaa |
11431083 |
T |
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| Q |
189 |
ggtttcactgcagctccaacaaaagca |
215 |
Q |
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| T |
11431084 |
ggttttactgcagttccaacaaaagca |
11431110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 11431159 - 11431216
Alignment:
| Q |
264 |
aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc |
321 |
Q |
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| T |
11431159 |
aggagaagcagcgcatagtggaatcatatgcatacctgtagttaaagaatggtggatc |
11431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 5878780 - 5878828
Alignment:
| Q |
39 |
tcatcacacaaagataaatattgaatcataccttatattattaattgtca |
88 |
Q |
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| T |
5878780 |
tcatcacacaaa-ataaatattgaatcataccttatattttcaattgtca |
5878828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 5874891 - 5874939
Alignment:
| Q |
39 |
tcatcacacaaagataaatattgaatcataccttatattattaattgtca |
88 |
Q |
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||||||||||| |||||||||||||||||||||||||| | |||||||| |
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|
| T |
5874891 |
tcatcacacaac-ataaatattgaatcataccttatattgtcaattgtca |
5874939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 20431259 - 20431292
Alignment:
| Q |
55 |
aatattgaatcataccttatattattaattgtca |
88 |
Q |
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| T |
20431259 |
aatattgaatcataccttatattgttaattgtca |
20431292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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