View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6501_low_9 (Length: 388)
Name: NF6501_low_9
Description: NF6501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6501_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 42530971 - 42530625
Alignment:
| Q |
18 |
ctacaaggcatgaacatgaagaatgaaagatggaaattgaatgtagaggattagaccatgcaaacgtagtgggactaatggagatacattgctctaaatc |
117 |
Q |
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| T |
42530971 |
ctacaaggcatgaacatgaagaatgaaagatggaaattgtatgtagaggattagaccatgcaaacttagtgggactaatggagatacattgctctaaatc |
42530872 |
T |
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| Q |
118 |
aaaaaactattgaagtgtgaatttgttgttacttgctattttcccttctctgttttgttatcaactgacattctttatggttattttattttagaataaa |
217 |
Q |
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| T |
42530871 |
aaaaaactattgaagtgtgaatttgttgttacttgctattttcccttctctgttttgttatcaactgacattctttatggttattttattttagaataaa |
42530772 |
T |
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| Q |
218 |
attaaaactcttgcagatttgagttatatattatgttttgcataattaatttaataactaactctacaatgtctgaacaaaagattgaaccatctgacac |
317 |
Q |
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| T |
42530771 |
attaaaactcttgcagatttgagttatatattatattttgcataataaattgagtaacttactctccaatttctgaacaaatgtttgaaccttctgtcac |
42530672 |
T |
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| Q |
318 |
tgtattccatgttaaaccctcaaaatttcgagatgaaaaaagtactc |
364 |
Q |
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| T |
42530671 |
catatcccatattaacccctcagaatttcaggatgaaaaaagtactc |
42530625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 95 - 260
Target Start/End: Complemental strand, 42536535 - 42536384
Alignment:
| Q |
95 |
atggagatacattgctctaaatcaaaaaactattgaagtgtgaatttgttgttacttgctattttcccttctctgttttgttatcaactgacattcttta |
194 |
Q |
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| T |
42536535 |
atggagatacattgctctaaatcaaaaaactattgaagtgtgaatttgttgttactt--------------tctgttttgttatcaactcatattcttta |
42536450 |
T |
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| Q |
195 |
tggttattttattttagaataaaattaaaactcttgcagatttgagttatatattatgttttgcat |
260 |
Q |
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| T |
42536449 |
tggttattttattttaggataaaaataaaactcttgcagatttgagttgtatgttatattttgcat |
42536384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 42537085 - 42537007
Alignment:
| Q |
19 |
tacaaggcatgaacatgaagaatgaaagat-ggaaattgaatgtagaggattagaccatgcaaacgtagtgggactaat |
96 |
Q |
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| T |
42537085 |
tacaaggcatggacatgaatgatgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaat |
42537007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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