View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6502_high_6 (Length: 259)
Name: NF6502_high_6
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6502_high_6 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 9048 - 9182
Alignment:
| Q |
1 |
caagcttcttctctcatggcacggtcagttttcaatcaaaattgattgatctgttgttcgccggcgagaaagaaagcggtttgtttagtttgaagaggcg |
100 |
Q |
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| T |
9048 |
caagcttcttctctcatggcacggtcagttttcaatcaaaattgattgatctgtggttcgccggcgagaaggaaagcggtttgttcagtttgaagaggcg |
9147 |
T |
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| Q |
101 |
tgtgttttcttacatttttatgaaaataccgctat |
135 |
Q |
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|||||||||||||||||||| ||||||||| |||| |
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| T |
9148 |
tgtgttttcttacatttttacgaaaatacccctat |
9182 |
T |
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