View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6502_high_9 (Length: 236)
Name: NF6502_high_9
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6502_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4866300 - 4866080
Alignment:
| Q |
16 |
ttacctactatttctttgaagtatttattttacaatcacatgtcttctacaagaacatgaaagaatcgctatctgaagttttcaacaagattaaaaatga |
115 |
Q |
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| T |
4866300 |
ttaccaactatttctttgaagtatttattttacaatcacatgtcttctacaagaacatgaaagaatcgctatctgaagtcttcaacaagattaaaaatga |
4866201 |
T |
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| Q |
116 |
ggcttgcgataaactaagaagatatagtgatcctttttcgaagtcttcatctggaccaacaaggaggctcacaagcaattacgaagaatgatctatatct |
215 |
Q |
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| T |
4866200 |
ggcttgctataaactaagaagatatagtgatcctttttcgaagtcttcatctggaccaacaaggaggctcacaagcaatttcgaagaatgatctatatct |
4866101 |
T |
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| Q |
216 |
caaatactcttcaacacagcc |
236 |
Q |
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| T |
4866100 |
caaatactcttcaacacagcc |
4866080 |
T |
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