View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6502_low_10 (Length: 262)

Name: NF6502_low_10
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6502_low_10
NF6502_low_10
[»] chr4 (6 HSPs)
chr4 (10-252)||(18040125-18040367)
chr4 (13-252)||(22707818-22708057)
chr4 (40-243)||(26217146-26217349)
chr4 (154-243)||(20556923-20557012)
chr4 (165-243)||(8660499-8660577)
chr4 (154-210)||(12509613-12509669)
[»] chr7 (12 HSPs)
chr7 (13-252)||(23882964-23883203)
chr7 (40-240)||(5206143-5206343)
chr7 (40-240)||(27437397-27437597)
chr7 (40-250)||(27973228-27973438)
chr7 (40-243)||(566125-566328)
chr7 (128-253)||(3428062-3428187)
chr7 (40-240)||(29025590-29025790)
chr7 (122-246)||(8814208-8814332)
chr7 (122-246)||(42634647-42634771)
chr7 (154-195)||(38413157-38413198)
chr7 (154-185)||(4944910-4944941)
chr7 (156-221)||(1957797-1957862)
[»] chr3 (17 HSPs)
chr3 (13-252)||(8808184-8808423)
chr3 (13-252)||(21611614-21611853)
chr3 (40-240)||(10719252-10719452)
chr3 (40-243)||(15681605-15681808)
chr3 (40-250)||(25266909-25267119)
chr3 (128-253)||(3680272-3680397)
chr3 (128-253)||(30016842-30016967)
chr3 (15-240)||(3241947-3242171)
chr3 (122-246)||(6198171-6198295)
chr3 (122-246)||(8620212-8620336)
chr3 (122-246)||(15533501-15533625)
chr3 (122-246)||(46396875-46396999)
chr3 (154-243)||(12476520-12476609)
chr3 (35-195)||(9551821-9551981)
chr3 (95-210)||(41001765-41001880)
chr3 (95-210)||(41010547-41010662)
chr3 (158-210)||(27884087-27884139)
[»] chr6 (15 HSPs)
chr6 (10-252)||(27513811-27514053)
chr6 (13-252)||(16821178-16821417)
chr6 (40-243)||(16637593-16637796)
chr6 (40-240)||(335501-335701)
chr6 (40-240)||(27055320-27055520)
chr6 (122-246)||(619532-619656)
chr6 (122-246)||(24147075-24147199)
chr6 (122-246)||(20044261-20044384)
chr6 (35-210)||(25503088-25503263)
chr6 (164-252)||(20456406-20456494)
chr6 (95-210)||(5007596-5007711)
chr6 (154-243)||(18912118-18912207)
chr6 (95-195)||(5989891-5989991)
chr6 (154-185)||(28306866-28306897)
chr6 (154-185)||(28355672-28355703)
[»] chr5 (16 HSPs)
chr5 (13-252)||(12391602-12391841)
chr5 (40-240)||(23639529-23639729)
chr5 (40-240)||(23833158-23833358)
chr5 (40-243)||(21992795-21992998)
chr5 (128-253)||(37581400-37581525)
chr5 (80-243)||(27230585-27230748)
chr5 (40-243)||(12177532-12177735)
chr5 (40-243)||(26086301-26086504)
chr5 (40-243)||(33841877-33842080)
chr5 (47-243)||(11810378-11810574)
chr5 (122-246)||(1801890-1802014)
chr5 (122-246)||(7258323-7258447)
chr5 (122-246)||(7790586-7790710)
chr5 (40-209)||(21864429-21864598)
chr5 (95-210)||(24961778-24961893)
chr5 (155-204)||(20380525-20380574)
[»] chr1 (7 HSPs)
chr1 (11-252)||(6201139-6201380)
chr1 (40-243)||(31555482-31555685)
chr1 (95-210)||(31543425-31543540)
chr1 (164-252)||(19371816-19371904)
chr1 (154-195)||(13467253-13467294)
chr1 (207-253)||(22430557-22430603)
chr1 (154-195)||(13472247-13472288)
[»] scaffold0004 (1 HSPs)
scaffold0004 (14-253)||(191669-191908)
[»] scaffold0551 (1 HSPs)
scaffold0551 (10-234)||(9549-9773)
[»] chr2 (10 HSPs)
chr2 (40-240)||(16276885-16277085)
chr2 (40-240)||(21856543-21856743)
chr2 (40-250)||(3762980-3763190)
chr2 (47-195)||(21116447-21116596)
chr2 (95-210)||(35142089-35142204)
chr2 (95-195)||(24288600-24288700)
chr2 (95-210)||(15949630-15949745)
chr2 (95-185)||(20614202-20614292)
chr2 (155-204)||(30689904-30689953)
chr2 (200-243)||(24702014-24702057)
[»] scaffold0389 (2 HSPs)
scaffold0389 (40-240)||(3156-3356)
scaffold0389 (163-196)||(2799-2832)
[»] chr8 (5 HSPs)
chr8 (122-246)||(21479567-21479691)
chr8 (156-234)||(24706466-24706544)
chr8 (154-243)||(32002753-32002842)
chr8 (166-243)||(20736703-20736780)
chr8 (166-243)||(20745261-20745338)
[»] scaffold1197 (1 HSPs)
scaffold1197 (12-78)||(2392-2458)
[»] scaffold0202 (1 HSPs)
scaffold0202 (154-243)||(24761-24850)
[»] scaffold0357 (1 HSPs)
scaffold0357 (164-243)||(9342-9421)
[»] scaffold0132 (1 HSPs)
scaffold0132 (154-234)||(31876-31956)
[»] scaffold0016 (1 HSPs)
scaffold0016 (95-195)||(19124-19224)
[»] scaffold0044 (2 HSPs)
scaffold0044 (155-210)||(71083-71138)
scaffold0044 (163-209)||(71468-71514)
[»] scaffold0001 (1 HSPs)
scaffold0001 (154-243)||(99449-99538)
[»] scaffold0157 (1 HSPs)
scaffold0157 (154-210)||(10808-10864)
[»] scaffold0600 (1 HSPs)
scaffold0600 (166-233)||(8992-9059)
[»] scaffold0009 (1 HSPs)
scaffold0009 (154-209)||(152731-152786)
[»] scaffold0605 (1 HSPs)
scaffold0605 (154-192)||(5266-5304)
[»] scaffold0114 (1 HSPs)
scaffold0114 (173-243)||(31053-31123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (164-209)||(301987-302032)
[»] scaffold0002 (1 HSPs)
scaffold0002 (95-195)||(125221-125321)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 18040125 - 18040367
Alignment:
Q  10 acatcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccaga 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18040125 acatcatcaggctcagaaaacaccgcagtatgatctgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccaga 18040224  T
Q  110 ccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18040225 ccacctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 18040324  T
Q  210 tctccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18040325 tctccttgaagattgaagtccagaaactgattgacgatgatgt 18040367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 22707818 - 22708057
Alignment:
Q  13 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22707818 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 22707917  T
Q  113 cctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 212  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22707918 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 22708017  T
Q  213 ccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22708018 ccttgaagattgaagtccagaaactgattgacgatgatgt 22708057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 26217349 - 26217146
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| |||||||| |||||||| |||| |||||||    
T  26217349 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 26217250  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||| ||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  26217249 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaatgtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 26217150  T
Q  240 ttga 243  Q
    ||||    
T  26217149 ttga 26217146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 20556923 - 20557012
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||  ||||||||||||||||| || |  || ||| |||| ||||| |||||||| ||||||||||||||||||||  |||||||    
T  20556923 tgacctctcctgtgccttccatcaaggagctcccggccatcacgtcgagcactgtttctctttgaagattgaagtccagaagttgattga 20557012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 8660499 - 8660577
Alignment:
Q  165 gtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    |||||||||||||||| || |   | |||||| | ||||| |||||||| |||||||||||||||||||| ||||||||    
T  8660499 gtgccttccatcaaggagctcccagccatgacatcgagcactgtttctctttgaagattgaagtccagaagctgattga 8660577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 12509669 - 12509613
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 210  Q
    |||||||| |||||| |||||||||||||||| ||||||||| | ||| ||||||||    
T  12509669 tgacctctcttgtgctttccatcaaggggcaccaggtcatgatgctgaacattgttt 12509613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 23883203 - 23882964
Alignment:
Q  13 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23883203 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 23883104  T
Q  113 cctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 212  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23883103 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 23883004  T
Q  213 ccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23883003 ccttgaagattgaagtccagaaactgattgacgatgatgt 23882964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 5206343 - 5206143
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  5206343 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 5206244  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  5206243 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 5206144  T
Q  240 t 240  Q
    |    
T  5206143 t 5206143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 27437397 - 27437597
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  27437397 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 27437496  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  27437497 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 27437596  T
Q  240 t 240  Q
    |    
T  27437597 t 27437597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 27973438 - 27973228
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||| |||||||| |||||||| |||| |||||||    
T  27973438 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagatattgccg 27973339  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  27973338 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 27973239  T
Q  240 ttgacgatgat 250  Q
    |||| ||||||    
T  27973238 ttgaagatgat 27973228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 566328 - 566125
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| |||||||||||||| |||||||| || | |||||||    
T  566328 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccagaccacctcctccgataccgaaaatattgccg 566229  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  566228 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 566129  T
Q  240 ttga 243  Q
    ||||    
T  566128 ttga 566125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 3428187 - 3428062
Alignment:
Q  128 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 227  Q
    |||||||||| ||||   ||||||| |||||||| |||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  3428187 aagaaattgctggctcaatggagacctgacctctgttgtgctttccatcaaggagcacaaagtcatgacattgagcattgtttctccttgaagattgaag 3428088  T
Q  228 tccagaaactgattgacgatgatgtc 253  Q
    ||||||| ||||||||||| ||||||    
T  3428087 tccagaagctgattgacgacgatgtc 3428062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 29025590 - 29025790
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  ||  |||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  29025590 tgatccgattccaatgaaatatggggagttgtttccctatttatttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 29025689  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||| ||||||||||||||||| ||||||   ||||| || || ||||||||||||||||| ||||    
T  29025690 gctcgatggagacctgatctcttttgtgttttccatcagggggcacaaggtcatgatgttgagtgctgtttttctttaaagattgaagtccagaagctga 29025789  T
Q  240 t 240  Q
    |    
T  29025790 t 29025790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 8814208 - 8814332
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  8814208 atacccaagaaattgccgactaggtggagacaagatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 8814307  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  8814308 ttgaagtccagaagctgatcgacga 8814332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 42634771 - 42634647
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  42634771 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 42634672  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  42634671 ttgaagtccagaagctgatcgacga 42634647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 38413157 - 38413198
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatga 195  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  38413157 tgacctctcttgtgccttccatcaaggggcaccaggtcatga 38413198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 4944941 - 4944910
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcac 185  Q
    ||||||||||||||||||||||||||||||||    
T  4944941 tgacctcttttgtgccttccatcaaggggcac 4944910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 1957797 - 1957862
Alignment:
Q  156 acctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    |||||||||||||||||||||||||||||  | |||| ||  ||||||| ||||| || |||||||    
T  1957797 acctcttttgtgccttccatcaaggggcatcatgtcacgatattgagcactgtttttctttgaaga 1957862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 8808184 - 8808423
Alignment:
Q  13 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8808184 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 8808283  T
Q  113 cctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 212  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8808284 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 8808383  T
Q  213 ccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8808384 ccttgaagattgaagtccagaaactgattgacgatgatgt 8808423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 21611614 - 21611853
Alignment:
Q  13 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21611614 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 21611713  T
Q  113 cctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 212  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21611714 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 21611813  T
Q  213 ccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  21611814 ccttgaagattgaagtccagaaactggttgacgatgatgt 21611853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 10719452 - 10719252
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| | || || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  10719452 tgatccgattccaatgaaatatgggtagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 10719353  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  10719352 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 10719253  T
Q  240 t 240  Q
    |    
T  10719252 t 10719252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 15681808 - 15681605
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| || ||||||||  || ||| ||| |  |||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||||||    
T  15681808 tgatccgattccaattaaatatgcaaagttgcctccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagaaattgccg 15681709  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  ||| |||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  15681708 gctcgatggagacctgatctcttttgtgttttctatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 15681609  T
Q  240 ttga 243  Q
    ||||    
T  15681608 ttga 15681605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 25266909 - 25267119
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| |||||||| |||||||| |||| |||||||    
T  25266909 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 25267008  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  || ||||||||||    
T  25267009 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggttcagaaactga 25267108  T
Q  240 ttgacgatgat 250  Q
    |||| ||||||    
T  25267109 ttgaagatgat 25267119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 3680272 - 3680397
Alignment:
Q  128 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 227  Q
    |||||||||| ||||   ||||||  |||||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  3680272 aagaaattgctggctcaatggagaactgacctctgttgtgctttccatcaaggagcacaaagtcatgacgttgagcattgtttctccttgaagattgaag 3680371  T
Q  228 tccagaaactgattgacgatgatgtc 253  Q
    ||||||| ||||||||||| ||||||    
T  3680372 tccagaagctgattgacgacgatgtc 3680397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 30016842 - 30016967
Alignment:
Q  128 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 227  Q
    |||||||||| ||||   ||||||| |||||||| |||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  30016842 aagaaattgctggctcaatggagacctgacctctgttgtgctttccatcaaggagcacaaagtcatgacattgagcattgtttctccttgaagattgaag 30016941  T
Q  228 tccagaaactgattgacgatgatgtc 253  Q
    ||||||| ||||||||||| ||||||    
T  30016942 tccagaagctgattgacgacgatgtc 30016967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 3242171 - 3241947
Alignment:
Q  15 atcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacc 114  Q
    |||||||||||||| || | |||||||||  |||||||||||||||||| ||| ||||||| |  |||||||| |  ||||||||||||||||||| ||     
T  3242171 atcaggctcagaaagcatcacagtatgatttgattcctatgaaatatgcagagttgcttccctatttgcttgagaagaaccttgtccagaccagacaacg 3242072  T
Q  115 tccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctcc 214  Q
    ||| ||| | ||||| |||||| | ||| ||| |||||  ||||||| || ||||||||||||||  |||| ||||||| |||||||||| || || |      
T  3242071 tcctccggtgcctaaaaaattgtcagctcggtagagacccgacctctcttatgccttccatcaagcagcaccaggtcattacgttgagcactgctt-ttt 3241973  T
Q  215 ttgaagattgaagtccagaaactgat 240  Q
    |||||||| ||||| |||||||||||    
T  3241972 ttgaagatcgaagttcagaaactgat 3241947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 6198171 - 6198295
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  6198171 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 6198270  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  6198271 ttgaagtccagaagctgatcgacga 6198295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 8620212 - 8620336
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  8620212 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 8620311  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  8620312 ttgaagtccagaagctgatcgacga 8620336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 15533625 - 15533501
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  15533625 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 15533526  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  15533525 ttgaagtccagaagctgatcgacga 15533501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 46396999 - 46396875
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  46396999 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 46396900  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||| ||||| ||||| |||||    
T  46396899 ttgaagttcagaagctgatcgacga 46396875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 12476609 - 12476520
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||  ||||||||||||| ||| ||||  |  |||||| |||||||||||||||| ||||||| |||||||||||| ||||||||    
T  12476609 tgacctctcctgtgccttccatcgaggagcacccgaccatgacattgagcattgtttctctttgaagactgaagtccagaagctgattga 12476520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 9551981 - 9551821
Alignment:
Q  35 cagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaat 134  Q
    |||| |||||||||||| ||||||||||||| | || ||||    ||||||   || || ||||||||||||||||||||||| |  |||||||||||||    
T  9551981 cagtttgatccgattcccatgaaatatgcggtgttgtttcccgatttgcttaggaggaagcttgtccagaccagaccacctcctcgtatacctaagaaat 9551882  T
Q  135 tgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatga 195  Q
    | || ||| | |  || |  ||||||| ||||| |||||||||||||||||  ||||||||    
T  9551881 ttccagctggctataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatga 9551821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 41001765 - 41001880
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  41001765 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 41001864  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  41001865 atattgagcgttgttt 41001880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 41010547 - 41010662
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  41010547 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 41010646  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  41010647 atattgagcgttgttt 41010662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 27884087 - 27884139
Alignment:
Q  158 ctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 210  Q
    |||| ||||||||||||||||||| ||| |||||||||  ||||||| |||||    
T  27884087 ctctattgtgccttccatcaagggacaccaggtcatgatattgagcactgttt 27884139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 27513811 - 27514053
Alignment:
Q  10 acatcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccaga 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27513811 acatcatcaggctcagaaaacaccgcagtatgatctgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccaga 27513910  T
Q  110 ccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513911 ccacctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 27514010  T
Q  210 tctccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  27514011 tctccttgaagattgaagtccagaaactgattgacaatgatgt 27514053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 16821417 - 16821178
Alignment:
Q  13 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16821417 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccagacca 16821318  T
Q  113 cctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 212  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16821317 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 16821218  T
Q  213 ccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  16821217 ccttgaagattgaggtccagaaactgattgacgatgatgt 16821178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 16637593 - 16637796
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||||||    
T  16637593 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagaaattgccg 16637692  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  16637693 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 16637792  T
Q  240 ttga 243  Q
    ||||    
T  16637793 ttga 16637796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 335701 - 335501
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || | |||||||||||| || |||||||| || ||||| ||||||||||||    
T  335701 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggatccttgtccagactaggccacctcctccaataccgaagaaattgccg 335602  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||| ||||    
T  335601 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaagctga 335502  T
Q  240 t 240  Q
    |    
T  335501 t 335501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 27055520 - 27055320
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||| ||| || |||||||| || ||||| ||||||||||||    
T  27055520 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccggactaggccacctcctccaataccgaagaaattgccg 27055421  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || |||||| |||||||||||||||    
T  27055420 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagatttaagtccagaaactga 27055321  T
Q  240 t 240  Q
    |    
T  27055320 t 27055320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 619656 - 619532
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  619656 atacccaagaaattgccgactaggtggagacaagatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 619557  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  619556 ttgaagtccagaagctgatcgacga 619532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 24147199 - 24147075
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  24147199 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 24147100  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  24147099 ttgaagtccagaagctgatcgacga 24147075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 20044384 - 20044261
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  20044384 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagca-tgtttctcctaggaaa 20044286  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  20044285 ttgaagtccagaagctgatcgacga 20044261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 25503263 - 25503088
Alignment:
Q  35 cagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaat 134  Q
    |||| |||||||||||| ||||||||||||| | || ||||    ||||||   || || ||||||||||||||||||||||| |  |||||||||||||    
T  25503263 cagtttgatccgattcccatgaaatatgcggtgttgtttcccgatttgcttaggaggaagcttgtccagaccagaccacctcctcgtatacctaagaaat 25503164  T
Q  135 tgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 210  Q
    |||| ||| | |  || |  ||||||| ||||| |||||||||||||||||  ||||||||  |||||| ||||||    
T  25503163 tgccagctggctataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatgatattgagcgttgttt 25503088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 20456494 - 20456406
Alignment:
Q  164 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||| ||||  || |||||| | ||||| |||||||| ||||||||||||||||| || ||||| ||||| |||||    
T  20456494 tgtgccttccatcaaggagcacccggccatgacatcgagcactgtttctctttgaagattgaagtccaaaagctgatcgacgacgatgt 20456406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 5007596 - 5007711
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  5007596 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 5007695  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  5007696 atattgagcgttgttt 5007711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 18912118 - 18912207
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||  ||| ||||||||||||| |||| ||| |||||| | |||||  ||||||| ||||||| |||||||||||| ||||||||    
T  18912118 tgacctctcatgttccttccatcaaggagcaccaggccatgacatcgagcaccgtttctctttgaagactgaagtccagaagctgattga 18912207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 5989891 - 5989991
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  5989891 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 5989990  T
Q  195 a 195  Q
    |    
T  5989991 a 5989991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 185
Target Start/End: Original strand, 28306866 - 28306897
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcac 185  Q
    ||||||||||||||||||||||||||||||||    
T  28306866 tgacctcttttgtgccttccatcaaggggcac 28306897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 185
Target Start/End: Original strand, 28355672 - 28355703
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcac 185  Q
    ||||||||||||||||||||||||||||||||    
T  28355672 tgacctcttttgtgccttccatcaaggggcac 28355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 12391841 - 12391602
Alignment:
Q  13 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12391841 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 12391742  T
Q  113 cctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 212  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12391741 cctccgccgatacctaagaaattaccgcctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 12391642  T
Q  213 ccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12391641 ccttgaagattgaagtccagaaactgattgacgatgatgt 12391602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 23639529 - 23639729
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  23639529 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 23639628  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  23639629 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 23639728  T
Q  240 t 240  Q
    |    
T  23639729 t 23639729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 23833358 - 23833158
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  23833358 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 23833259  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  23833258 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 23833159  T
Q  240 t 240  Q
    |    
T  23833158 t 23833158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 21992998 - 21992795
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| || || |||||||| |||||||| ||||||||||||    
T  21992998 tgatccgattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaactaggccacctcctccgataccgaagaaattgccg 21992899  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  21992898 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattggggtccagaaactga 21992799  T
Q  240 ttga 243  Q
    ||||    
T  21992798 ttga 21992795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 37581400 - 37581525
Alignment:
Q  128 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 227  Q
    |||||||||||||||   ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  37581400 aagaaattgccggctcaatggagacctgacctcttttgtgctttccatcaaggagcacaaggtcatgacattgagcattgtttctccttgaagattgaag 37581499  T
Q  228 tccagaaactgattgacgatgatgtc 253  Q
    ||||||| ||||||||||| ||||||    
T  37581500 tccagaagctgattgacgacgatgtc 37581525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 27230748 - 27230585
Alignment:
Q  80 ttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaag 179  Q
    |||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||||||||| | ||||||| ||| ||||||||||  ||||||||||    
T  27230748 ttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagaaattgccggctcgatggagacctgatctcttttgtgttttccatcaag 27230649  T
Q  180 gggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    |||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||||||    
T  27230648 gggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactgattga 27230585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 12177735 - 12177532
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| |||||||||||||| |||||||| || | |||||||    
T  12177735 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccagaccacctcctccgataccgaaaatattgccg 12177636  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  12177635 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 12177536  T
Q  240 ttga 243  Q
    ||||    
T  12177535 ttga 12177532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 26086504 - 26086301
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| |||||||||||||| |||||||| || | |||||||    
T  26086504 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccagaccacctcctccgataccgaaaatattgccg 26086405  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  26086404 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 26086305  T
Q  240 ttga 243  Q
    ||||    
T  26086304 ttga 26086301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 33842080 - 33841877
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| |||||||| |||||||| |||| |||||||    
T  33842080 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 33841981  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  33841980 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 33841881  T
Q  240 ttga 243  Q
    ||||    
T  33841880 ttga 33841877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 47 - 243
Target Start/End: Complemental strand, 11810574 - 11810378
Alignment:
Q  47 attcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggt 146  Q
    ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||| |||||||| |||||||| || | |||||||||| | |    
T  11810574 attccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaaaatattgccggctcgat 11810475  T
Q  147 ggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    |||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||||||    
T  11810474 ggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactgattga 11810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 1801890 - 1802014
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  1801890 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 1801989  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  1801990 ttgaagtccagaagctgatcgacga 1802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 7258447 - 7258323
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  7258447 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 7258348  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  7258347 ttgaagtccagaagctgatcgacga 7258323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 7790586 - 7790710
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  7790586 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 7790685  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  7790686 ttgaagtccagaagctgatcgacga 7790710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 21864598 - 21864429
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| |||||||||||||||||| |||||   |||||| | || ||||| ||||| || | ||||||||| || || ||||||||||||||     
T  21864598 tgatccaattccaatgaaatatgcggagctgtttcctgatttgcttaagaggaacctcgtccaaactaaaccacctcctccaatgcctaagaaattgcct 21864499  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||  |||  ||| | || ||||  |||| ||||||||||||||||| |||||||||| |||||| |||||    
T  21864498 gcacggtttagagtcgatctctcatgtgtcttccatcaaggggcactaggtcatgacattgagcgttgtt 21864429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 24961893 - 24961778
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  24961893 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 24961794  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  24961793 atattgagcgttgttt 24961778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 20380525 - 20380574
Alignment:
Q  155 gacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagca 204  Q
    |||||||||||||| |||||||||||||||| |||||||||  |||||||    
T  20380525 gacctcttttgtgctttccatcaaggggcaccaggtcatgatattgagca 20380574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 6201380 - 6201139
Alignment:
Q  11 catcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6201380 catcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccagac 6201281  T
Q  111 cacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6201280 cacctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtgtcttccatcaaggggcgcaaggtcatgacgttgagcattgttt 6201181  T
Q  211 ctccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  6201180 ctccttgaagattgaaatccagaaattgattgacgatgatgt 6201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 31555482 - 31555685
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  31555482 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 31555581  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  31555582 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 31555681  T
Q  240 ttga 243  Q
    ||||    
T  31555682 ttga 31555685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 31543425 - 31543540
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  31543425 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 31543524  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  31543525 atattgagcgttgttt 31543540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 19371816 - 19371904
Alignment:
Q  164 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattgacgatgatgt 252  Q
    ||||||||||||||||| ||||  || |||||| | ||||| |||||||| ||||||||||||||||| ||  |||| ||||| |||||    
T  19371816 tgtgccttccatcaaggagcacccggccatgacatcgagcactgtttctctttgaagattgaagtccataagttgatcgacgacgatgt 19371904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 13467253 - 13467294
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatga 195  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  13467253 tgacctctcttgtgccttccatcaaggggcaccaggtcatga 13467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 22430557 - 22430603
Alignment:
Q  207 gtttctccttgaagattgaagtccagaaactgattgacgatgatgtc 253  Q
    ||||||||||||||||||||||||||||  |||| || |||||||||    
T  22430557 gtttctccttgaagattgaagtccagaagttgatcgaggatgatgtc 22430603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 13472247 - 13472288
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatga 195  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  13472247 tgacctctcttatgccttccatcaaggggcaccaggtcatga 13472288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 191908 - 191669
Alignment:
Q  14 catcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||    
T  191908 catcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttcctactttgcttgagaggaaccttgtccagaccagaccac 191809  T
Q  114 ctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctc 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  191808 ctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtaccttccatcgaggggcacaaggtcatgacgttgagcactgtttctc 191709  T
Q  214 cttgaagattgaagtccagaaactgattgacgatgatgtc 253  Q
    ||||||||||||||||||||| ||||| ||||| ||||||    
T  191708 cttgaagattgaagtccagaagctgatcgacgacgatgtc 191669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 9773 - 9549
Alignment:
Q  10 acatcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccaga 109  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  9773 acatcatcaggctcagaaaacaccacaatatgatctgattcctatgaaatatgcggagctgcttccttctttgcttgagaggaaccttgtccagaccaga 9674  T
Q  110 ccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||    
T  9673 ccacctccgccgatacctaagaaattgccggctaggtggagacctgacctctattgtacctttcatcaaggggcacaaggtcatgacgttgagcattgtt 9574  T
Q  210 tctccttgaagattgaagtccagaa 234  Q
    |||||||||||||||||||||||||    
T  9573 tctccttgaagattgaagtccagaa 9549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 16276885 - 16277085
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || |||||||| || ||||| ||||||||||||    
T  16276885 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 16276984  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  16276985 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 16277084  T
Q  240 t 240  Q
    |    
T  16277085 t 16277085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 21856743 - 21856543
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||||||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| || || |||||||| |||||||| ||||||||||||    
T  21856743 tgatccgattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaactaggccacctcctccgataccgaagaaattgccg 21856644  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  21856643 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattggggtccagaaactga 21856544  T
Q  240 t 240  Q
    |    
T  21856543 t 21856543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 3763190 - 3762980
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| |||||||| |||||||| |||| |||||||    
T  3763190 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 3763091  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  3763090 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 3762991  T
Q  240 ttgacgatgat 250  Q
    |||| ||||||    
T  3762990 ttgaagatgat 3762980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 21116447 - 21116596
Alignment:
Q  47 attcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaatt-gccggctagg 145  Q
    ||||| || |||||||| |||||||||||    |||||| | |  ||||||||||||||||||||||||   | | ||||||||||||| ||| ||| ||    
T  21116447 attcccataaaatatgcagagctgcttcccggtttgcttaagaagaaccttgtccagaccagaccaccttatcgggtacctaagaaatttgccagctggg 21116546  T
Q  146 tggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatga 195  Q
    |  || |  ||||||||||||||||||||||||||||||| || ||||||    
T  21116547 tataggcccgacctcttttgtgccttccatcaaggggcaccagatcatga 21116596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 35142089 - 35142204
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  35142089 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 35142188  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  35142189 atattgagcgttgttt 35142204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 24288600 - 24288700
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    ||||||||||||||||||| ||| |  || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  24288600 cttgtccagaccagaccacttcctcgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 24288699  T
Q  195 a 195  Q
    |    
T  24288700 a 24288700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 15949745 - 15949630
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    ||||||||||| |||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  15949745 cttgtccagacaagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 15949646  T
Q  195 acgttgagcattgttt 210  Q
    |  |||||| ||||||    
T  15949645 atattgagcgttgttt 15949630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 20614202 - 20614292
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcac 185  Q
    |||||||||||||||||||||||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||    
T  20614202 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctattgtgtcttccatcaaggggcac 20614292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 30689953 - 30689904
Alignment:
Q  155 gacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagca 204  Q
    |||||||||||||| |||||||||||||||| |||||||||  |||||||    
T  30689953 gacctcttttgtgctttccatcaaggggcaccaggtcatgatattgagca 30689904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 24702014 - 24702057
Alignment:
Q  200 gagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||    
T  24702014 gagcactgtttctctttgaagattgaagtccagaagctgattga 24702057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 3156 - 3356
Alignment:
Q  40 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacctccgccgatacctaagaaattgccg 139  Q
    |||||| ||||| |||||||||||  |||||||||| |  || ||||| || ||||||||||| || || |||||||| |||||||  ||||||||||||    
T  3156 tgatccaattccaatgaaatatgcaaagctgcttccctattttcttgagaggaaccttgtccaaactaggccacctcctccgatacaaaagaaattgccg 3255  T
Q  140 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 239  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||| ||||| || ||||    
T  3256 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgaggtccaaaagctga 3355  T
Q  240 t 240  Q
    |    
T  3356 t 3356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 2799 - 2832
Alignment:
Q  163 ttgtgccttccatcaaggggcacaaggtcatgac 196  Q
    ||||||||||||||||||||||| ||||||||||    
T  2799 ttgtgccttccatcaaggggcaccaggtcatgac 2832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 21479691 - 21479567
Alignment:
Q  122 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 221  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  21479691 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 21479592  T
Q  222 ttgaagtccagaaactgattgacga 246  Q
    ||||||||||||| ||||| |||||    
T  21479591 ttgaagtccagaagctgatcgacga 21479567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 24706544 - 24706466
Alignment:
Q  156 acctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaa 234  Q
    |||||| ||||||||||||| ||||||||| |  ||||||||||||||| |||||||| ||||||||  ||||||||||    
T  24706544 acctctcttgtgccttccatgaaggggcaccaactcatgacgttgagcactgtttctctttgaagatcaaagtccagaa 24706466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 32002753 - 32002842
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||  ||||||||||||||||| || |  || || ||||| ||||| |||||||| ||||||||||||||||||||  |||||||    
T  32002753 tgacctctcctgtgccttccatcaaggagctcccggccacgacgtcgagcactgtttctctttgaagattgaagtccagaagttgattga 32002842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 20736703 - 20736780
Alignment:
Q  166 tgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||||||||| ||||  || |||||| |  |||| |||||||| ||||||| |||||||||||| || |||||    
T  20736703 tgccttccatcaaggagcaccgggccatgacatcaagcactgtttctctttgaagactgaagtccagaagcttattga 20736780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 20745261 - 20745338
Alignment:
Q  166 tgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||||||||| ||||  || |||||| |  |||| |||||||| ||||||| |||||||||||| || |||||    
T  20745261 tgccttccatcaaggagcaccgggccatgacatcaagcactgtttctctttgaagactgaagtccagaagcttattga 20745338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 2392 - 2458
Alignment:
Q  12 atcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttc 78  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2392 atcatcaggctcggaaaacaccgcagtatgatctgattcctatgaaatatgcggagctgcttccttc 2458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 24850 - 24761
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||  ||||||||||||||||| ||||  || |||||| | || || |||||||| |||||||||||||||||||| ||||||||    
T  24850 tgacctctcatgtgccttccatcaaggagcacccggccatgacatcgaacactgtttctctttgaagattgaagtccagaagctgattga 24761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 9342 - 9421
Alignment:
Q  164 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||||||||||| || |  || |||||| | |||||||||||||| ||||| |||||||||||||| ||||||||    
T  9342 tgtgccttccatcaaggagctcccggccatgacatcgagcattgtttctctttgaaaattgaagtccagaagctgattga 9421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 31876 - 31956
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaa 234  Q
    ||||||||  ||||||||||||||||| || |  || |||||| | ||||| |||||||| ||||||||||||||||||||    
T  31876 tgacctctcctgtgccttccatcaaggagctcccggccatgacatcgagcactgtttctctttgaagattgaagtccagaa 31956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 19124 - 19224
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    ||||||||||||||||||| ||| |  || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  19124 cttgtccagaccagaccacatcctcgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 19223  T
Q  195 a 195  Q
    |    
T  19224 a 19224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 71138 - 71083
Alignment:
Q  155 gacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 210  Q
    |||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||    
T  71138 gacctcttttgtgctttccatcaaggggcaccaggtcatgatattgagcactgttt 71083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 71514 - 71468
Alignment:
Q  163 ttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  71514 ttgtgccttccatcaaggggcaccaggtcatgacactgagcagtgtt 71468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 99449 - 99538
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    ||||||||  ||||||||||||||||| || |  || || || || ||||| |||||||| ||||||||||||||||||||  |||||||    
T  99449 tgacctctcctgtgccttccatcaaggagctcccggccacgatgtcgagcactgtttctcattgaagattgaagtccagaagttgattga 99538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 10808 - 10864
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 210  Q
    |||||||| |||||| |||||||||||||||| ||||||||| | ||| ||||||||    
T  10808 tgacctctcttgtgctttccatcaaggggcaccaggtcatgatgctgaacattgttt 10864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 8992 - 9059
Alignment:
Q  166 tgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccaga 233  Q
    ||||||||||||||| || |  |  |||||||||||||| | |||||| |||||||||||||||||||    
T  8992 tgccttccatcaaggagctcccgaccatgacgttgagcactatttctctttgaagattgaagtccaga 9059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 152731 - 152786
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||||| |||||||||||||||||||||||||| ||| |||||| | ||||| ||||    
T  152731 tgaccgcttttgtgccttccatcaaggggcactaggacatgacatcgagcactgtt 152786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 5304 - 5266
Alignment:
Q  154 tgacctcttttgtgccttccatcaaggggcacaaggtca 192  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  5304 tgacctctcttgtgccttccatcaaggggcaccaggtca 5266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 31123 - 31053
Alignment:
Q  173 catcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 243  Q
    |||||||| ||||  || |||||| | ||||| |||||||| ||||||||||||||||| || ||||||||    
T  31123 catcaaggagcacctggccatgacatcgagcaatgtttctctttgaagattgaagtccataagctgattga 31053  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 301987 - 302032
Alignment:
Q  164 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 209  Q
    ||||||||||||||||||||||  || |||||| ||||||||||||    
T  301987 tgtgccttccatcaaggggcacccggccatgacattgagcattgtt 302032  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 125221 - 125321
Alignment:
Q  95 cttgtccagaccagaccacctccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 194  Q
    ||||||||||||||||||| |||    || |||||||||||| | ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  125221 cttgtccagaccagaccacgtccttgtatgcctaagaaattgtcagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 125320  T
Q  195 a 195  Q
    |    
T  125321 a 125321  T

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