View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6502_low_14 (Length: 239)
Name: NF6502_low_14
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6502_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 47403986 - 47404189
Alignment:
| Q |
20 |
aaaattaacttggctcttaactaaactaagtttggaaagttggaaaggagcattttataatcatgaataattttgccaaactcagattggtttgtagatt |
119 |
Q |
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| T |
47403986 |
aaaattaacttggctgttaaccaaactaagtttggaaagttgaaaaggagaattttataatcatgaataattttgctaaactcagattggtttgtagatt |
47404085 |
T |
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| Q |
120 |
tgtcccctatgccatcagtaactagcttgcaatctagttctatcaacacatttgacatccccatttcatcaagccaaatcgtaacttccttgagtcccca |
219 |
Q |
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| T |
47404086 |
tgtcccctatgccatcagtaaccagcttgcaatctagttctatcgacacatttaacatccccatttcatcaagccaaatcgtagcttccttgagtcccca |
47404185 |
T |
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| Q |
220 |
tgtt |
223 |
Q |
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|||| |
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| T |
47404186 |
tgtt |
47404189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 40316334 - 40316184
Alignment:
| Q |
47 |
aagtttggaaagttggaaaggagcattttataatcatgaataattttgccaaactcagattggtttgtagatttgtcccctatgccatcagtaactagct |
146 |
Q |
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| T |
40316334 |
aagtttggatagttggaaaggagcattctacaatcgcttacaatttggccgaactccaattggtttgtggatctatctaaaatgtcttcagtcactagtt |
40316235 |
T |
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| Q |
147 |
tgcaatctagttctatcaacacatttgacatccccatttcatcaagccaaa |
197 |
Q |
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| T |
40316234 |
tgcaatctagttcaattgacacatttggcgtccccatttcaccaagccaaa |
40316184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 891910 - 891978
Alignment:
| Q |
62 |
gaaaggagcattttataatcatgaataattttgccaaactcagattggtttgtagatttgtcccctatg |
130 |
Q |
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| T |
891910 |
gaaaagagcattttataatcatgaataattttgccaaactcaatttggtttgtagttttatcccctatg |
891978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 22619522 - 22619441
Alignment:
| Q |
140 |
actagcttgcaatctagttctatcaacacatttgacatccccatttcatcaagccaaatcgtaacttccttgagtccccatg |
221 |
Q |
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| T |
22619522 |
actagtttgcaatctagttcaattgtcacatttgacatccccatttcaccaagccaaagaatagcctccttgagtccccatg |
22619441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 45581605 - 45581551
Alignment:
| Q |
98 |
aactcagattggtttgtagatttgtcccctatgccatcagtaactagcttgcaat |
152 |
Q |
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| T |
45581605 |
aactcatattggtttgtaaatgtgtcccctatgccatcgattactagcttgcaat |
45581551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 32912860 - 32912787
Alignment:
| Q |
47 |
aagtttggaaagttggaaaggagcattttataatcatgaataattttgccaaactcagattggtttgtagattt |
120 |
Q |
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||||||||| |||| ||||| ||||| || ||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
32912860 |
aagtttggatagttagaaagaagcatcctacaatcagacataattttgccaaactcggattggtttgtatattt |
32912787 |
T |
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