View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6502_low_15 (Length: 238)

Name: NF6502_low_15
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6502_low_15
NF6502_low_15
[»] chr6 (1 HSPs)
chr6 (10-238)||(18640263-18640491)
[»] chr3 (2 HSPs)
chr3 (10-238)||(1836938-1837166)
chr3 (20-221)||(41384781-41384990)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 18640491 - 18640263
Alignment:
Q  10 catcatcaatattccaccgtatatactgactatgnnnnnnngaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 109  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640491 catcatcaatattccaccgtatatactgactatgtttttttgaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 18640392  T
Q  110 gaacccaacccgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacgttctatctatttcctc 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640391 gaacccaacctgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacgttctatctatttcctc 18640292  T
Q  210 tgctcgattcaattcttgagaatggcgtt 238  Q
    |||||||||||||||||||||||||||||    
T  18640291 tgctcgattcaattcttgagaatggcgtt 18640263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 1836938 - 1837166
Alignment:
Q  10 catcatcaatattccaccgtatatactgactatgnnnnnnngaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 109  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836938 catcatcaacattccaccgtatatactgactatgtttttttgaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 1837037  T
Q  110 gaacccaacccgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacgttctatctatttcctc 209  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  1837038 gaacccaacctgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacggtctatctatttccta 1837137  T
Q  210 tgctcgattcaattcttgagaatggcgtt 238  Q
    |||||||||||||||||||||||||||||    
T  1837138 tgctcgattcaattcttgagaatggcgtt 1837166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 41384990 - 41384781
Alignment:
Q  20 attccaccgtatatactgactatgnnnnnnngaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcatgaacccaacc 119  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||   ||||||||| |||| |||||||||||||||||    
T  41384990 attccaccgtatatactgactattttattctgaagcattcaaagtgtcatattttccttcttctt---cccttaactgactt-ccatcatgaacccaacc 41384895  T
Q  120 cgagtattaacaaccaac--tgattctatctttctcacacag----------tgggaatgattaatttgataaaggatttattacgttctatctatttcc 207  Q
     || |||||| ||||||   | ||| | ||| |||||||||           |||||||||||||||||||||||||||||||||  ||| |||||||||    
T  41384894 tgaatattaagaaccaaaattcattatttctctctcacacacacaaacaaaatgggaatgattaatttgataaaggatttattacagtctctctatttcc 41384795  T
Q  208 tctgctcgattcaa 221  Q
    | ||||||||||||    
T  41384794 tatgctcgattcaa 41384781  T

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