View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6502_low_2 (Length: 915)

Name: NF6502_low_2
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6502_low_2
NF6502_low_2
[»] chr2 (4 HSPs)
chr2 (14-334)||(18031190-18031506)
chr2 (384-541)||(18030983-18031140)
chr2 (559-730)||(18030824-18030995)
chr2 (754-897)||(18030644-18030788)
[»] chr4 (2 HSPs)
chr4 (159-322)||(55156474-55156642)
chr4 (385-492)||(55156304-55156411)
[»] chr3 (5 HSPs)
chr3 (160-334)||(29642020-29642198)
chr3 (391-492)||(29641862-29641963)
chr3 (240-290)||(4803977-4804027)
chr3 (243-290)||(10535703-10535750)
chr3 (123-157)||(48101527-48101561)
[»] chr7 (3 HSPs)
chr7 (259-328)||(22002453-22002522)
chr7 (385-492)||(22002579-22002686)
chr7 (14-139)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (234-330)||(32309433-32309529)
chr8 (17-154)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (234-330)||(33364663-33364759)
chr6 (17-154)||(33364360-33364496)
chr6 (122-157)||(22208490-22208525)
chr6 (115-157)||(16592721-16592763)
chr6 (105-155)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (234-330)||(30330131-30330227)
chr1 (17-154)||(30330394-30330530)
chr1 (243-290)||(25626139-25626186)
chr1 (123-157)||(9934245-9934279)
chr1 (105-155)||(24208117-24208167)
chr1 (105-155)||(45027897-45027947)
chr1 (105-155)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (243-290)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 18031506 - 18031190
Alignment:
Q  14 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaata 113  Q
    ||||||||||  ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||     |||||||||    
T  18031506 cagagacaccagaagactttaagttgagaataggagggacgtttttggtaaaaaaattgtatttggtgtttgaagagctaattgtt-----ggaagaata 18031412  T
Q  114 attaacaaataagtagccatatgaagagcatgatgccaaaatgatgtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttacattatga 213  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  18031411 attaacaaataagtagtcatatgaagagcatgatgtcaaaaagatgtgaggtgtggggacaagaaaattggaagctcattccattatatttacattatga 18031312  T
Q  214 aaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 312  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18031311 aaagaagtattgtcatattcttttctgttatcacattgaaaacattttatatctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 18031212  T
Q  313 aataagcttgagatttatgtgc 334  Q
    ||||||||||||||||||||||    
T  18031211 aataagcttgagatttatgtgc 18031190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 384 - 541
Target Start/End: Complemental strand, 18031140 - 18030983
Alignment:
Q  384 gagtaacgatgaccaccaggaccaagagttgctgatgtccaacgatcactatgcacaatatcaaacgaaattaaaaggtgagacaaagattcataaaatg 483  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18031140 gagtaacgatgaccaccatgaccaagagttgttgatgtccaacgatcactatgcacaatatcaaacgaaattaaagggtgagacaaagattcataaaatg 18031041  T
Q  484 acatttttaagtgtttgaaatcataaactcattacctcaaccaaactactaaaggttt 541  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18031040 acatttttaagtgtttgaaatcataaactcattacttcaaccaaactactaaaggttt 18030983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 559 - 730
Target Start/End: Complemental strand, 18030995 - 18030824
Alignment:
Q  559 ctaccaaaggtttgaatgagttggttcggattagaaccaaccttaaatgggttcgaacaaatgcgggttgaatgggtcacccggaccaatgaacacccgt 658  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  18030995 ctactaaaggtttgaatgagttggttcggattagaaccaaacttaaatgggttcgaacaaatgcgggttgaatgggttatccggaccaatgaacacccgt 18030896  T
Q  659 acatatgactgtgtcggctcggaggggcacggtcgcaaatggaaagcgaaaaatacaaaattacccttaaat 730  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  18030895 acatatgactgtatcggctcggaggggcacggtcgcaaatggaaagagaaaaatacgaaattgcccttaaat 18030824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 754 - 897
Target Start/End: Complemental strand, 18030788 - 18030644
Alignment:
Q  754 gtccctaaatt-cccaaataaaacctatttgtttcggtttttgacgttacgaacctctggacccaggccgtgctccaccgctccgttctgtccacaaccg 852  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  18030788 gtccctaaatttcccaaataaaacccatttgtttcggtttttgacgttgcgaacctctggacctaggccgtgctccaccgctccgttctgtccacagccg 18030689  T
Q  853 cattttcttcaagcgccgtcgcatcccctatcattccatagctat 897  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  18030688 cattgtcttcaagcgccgtcgcatcccctatcattccatagctat 18030644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 159 - 322
Target Start/End: Complemental strand, 55156642 - 55156474
Alignment:
Q  159 gtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaa 253  Q
    |||||||||| | ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| ||||||    
T  55156642 gtgaggtgtgaggacaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaa 55156543  T
Q  254 acattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 322  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156542 acattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 385 - 492
Target Start/End: Complemental strand, 55156411 - 55156304
Alignment:
Q  385 agtaacgatgaccaccaggaccaagagttgctgatgtccaacgatcactatgcacaatatcaaacgaaattaaaaggtgagacaaagattcataaaatga 484  Q
    |||||||||||||||||| || |||||||| |||||||||| |||||||||| |||||||||||||  | ||||  ||||||||||||||||||||||||    
T  55156411 agtaacgatgaccaccagaactaagagttggtgatgtccaaagatcactatgtacaatatcaaacggtaataaagtgtgagacaaagattcataaaatga 55156312  T
Q  485 cattttta 492  Q
    ||||||||    
T  55156311 cattttta 55156304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 8e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 160 - 334
Target Start/End: Complemental strand, 29642198 - 29642020
Alignment:
Q  160 tgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaa 254  Q
    ||||||||| | |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| |||||||    
T  29642198 tgaggtgtgaggacaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaa 29642100  T
Q  255 cattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 334  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642099 cattgtatatctcttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 492
Target Start/End: Complemental strand, 29641963 - 29641862
Alignment:
Q  391 gatgaccaccaggaccaagagttgctgatgtccaacgatcactatgcacaatatcaaacgaaattaaaaggtgagacaaagattcataaaatgacatttt 490  Q
    ||||||||| || || ||| |||| ||| |||||| ||| || |||||||||||||||||  | ||||  ||||||||||||||||||||||| ||||||    
T  29641963 gatgaccactagaactaagggttggtgaagtccaaagattaccatgcacaatatcaaacggtaataaagtgtgagacaaagattcataaaatggcatttt 29641864  T
Q  491 ta 492  Q
    ||    
T  29641863 ta 29641862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  240 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  243 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 48101527 - 48101561
Alignment:
Q  123 taagtagccatatgaagagcatgatgccaaaatga 157  Q
    ||||||||||| |||||||||||||||||||||||    
T  48101527 taagtagccatttgaagagcatgatgccaaaatga 48101561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  259 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 328  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 385 - 492
Target Start/End: Original strand, 22002579 - 22002686
Alignment:
Q  385 agtaacgatgaccaccaggaccaagagttgctgatgtccaacgatcactatgcacaatatcaaacgaaattaaaaggtgagacaaagattcataaaatga 484  Q
    ||||| |||||||||||  || |||||||  |||||||||| |||||||||||||||||||||| |  | | ||  |||||||||| |||||| ||||||    
T  22002579 agtaatgatgaccaccataactaagagttagtgatgtccaaagatcactatgcacaatatcaaaaggtaatgaagtgtgagacaaatattcatgaaatga 22002678  T
Q  485 cattttta 492  Q
     |||||||    
T  22002679 aattttta 22002686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 22002144 - 22002269
Alignment:
Q  14 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgt-ttggttggaagaat 112  Q
    ||||||||||| | ||||||||| ||||||| ||||| | || ||| | |||  ||| ||| |||| |||| |||||||| || | ||||||||||||||    
T  22002144 cagagacacccgatgactttaagatgagaataggaggaa-atattttgataaggaatcgtagttggggttttaagagctacttatgttggttggaagaat 22002242  T
Q  113 aattaacaaataagtagccatatgaag 139  Q
    | ||||||||||||| | |||||||||    
T  22002243 atttaacaaataagtggtcatatgaag 22002269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  234 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 330  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 32309130 - 32309266
Alignment:
Q  17 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 116  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  32309130 agacatccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 32309228  T
Q  117 aacaaataagtagccatatgaagagcatgatgccaaaa 154  Q
    || | |||||||||||| ||||| || |||||||||||    
T  32309229 aagagataagtagccatttgaagtgcgtgatgccaaaa 32309266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  234 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 330  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 33364360 - 33364496
Alignment:
Q  17 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 116  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  33364360 agacaaccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 33364458  T
Q  117 aacaaataagtagccatatgaagagcatgatgccaaaa 154  Q
    || | |||||||||||| ||||| || |||||||||||    
T  33364459 aagagataagtagccatttgaagtgcgtgatgccaaaa 33364496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 22208490 - 22208525
Alignment:
Q  122 ataagtagccatatgaagagcatgatgccaaaatga 157  Q
    |||||||||||| |||||||||||||||||||||||    
T  22208490 ataagtagccatttgaagagcatgatgccaaaatga 22208525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 16592763 - 16592721
Alignment:
Q  115 ttaacaaataagtagccatatgaagagcatgatgccaaaatga 157  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  16592763 ttaacatataagttgccatgtgaagagcatgatgccaaaatga 16592721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 33164183 - 33164133
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 33164133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  234 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 330  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 30330530 - 30330394
Alignment:
Q  17 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 116  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  30330530 agacagccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 30330432  T
Q  117 aacaaataagtagccatatgaagagcatgatgccaaaa 154  Q
    || | |||||||||||| ||||| || |||||||||||    
T  30330431 aagagataagtagccatttgaagtgcgtgatgccaaaa 30330394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  243 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 9934245 - 9934279
Alignment:
Q  123 taagtagccatatgaagagcatgatgccaaaatga 157  Q
    ||||||||||| |||||||||||||||||||||||    
T  9934245 taagtagccatttgaagagcatgatgccaaaatga 9934279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 24208167 - 24208117
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 24208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 45027947 - 45027897
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45027897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 45032795 - 45032745
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45032745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  243 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University