View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6502_low_3 (Length: 618)
Name: NF6502_low_3
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6502_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 6 - 607
Target Start/End: Complemental strand, 21078609 - 21077996
Alignment:
| Q |
6 |
catcatcatcgtcatcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgat |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21078609 |
catcatcatcgtcatcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgat |
21078510 |
T |
|
| Q |
106 |
gctgcgctttttctttttatgggaacttggaggaaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacata |
205 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21078509 |
gctgcgttttttctttttatgggaacttggaggcaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacata |
21078410 |
T |
|
| Q |
206 |
tcactctgttgctccaagaaggagacagggaagaaggatgtggttggagactcaatacccttttcgcggtgcgatctcatgttggaaggaaaaaccttat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
21078409 |
tcactctgttgctccaagaaggagacagggaagaaggatgtggtcggagactcaatacccttttcgcagtgcgatctcatgttggacggaaaaaccttat |
21078310 |
T |
|
| Q |
306 |
catggtcaagaaaagcatgcttctgcttcctatgatcatcaagaacatcatgtttatgtttcttggtcagaggttgttgaacaaggtgatcagagcggtg |
405 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21078309 |
catagtcaagaaatgcatgcttctgcttcctatgatcatcaagaacatcatgtttctgtttcttggtcagaggttgttgaacaaggtgatcagagcggtg |
21078210 |
T |
|
| Q |
406 |
gtgatgtgatttgtggccaccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattaaacaaccaatattcttt |
505 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21078209 |
gtgatgtgatttgtggccgccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattgaacaaccaatattcttt |
21078110 |
T |
|
| Q |
506 |
ttctgctcatc------------gtgatcatattctttcttttgttgttgttgtttatggttgtcgtaacaagaacgatgagaaaaatgtttcttcatga |
593 |
Q |
| |
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||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21078109 |
ttctgatcatcagtagcatcatggtgatcatattctttcttttgatgttgttgtttatggttgtcgtaacaagaacgaagagaaaaatgtttcttcatga |
21078010 |
T |
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| Q |
594 |
tcgtgatgatgatg |
607 |
Q |
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|||||||||||||| |
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| T |
21078009 |
tcgtgatgatgatg |
21077996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
40 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
96 |
Q |
| |
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||||||||| |||||| ||| |||| |||||||| ||||||||||||| |||||||| |
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|
| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 30617998 - 30618030
Alignment:
| Q |
6 |
catcatcatcgtcatcatcaccaccaccaccac |
38 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
30617998 |
catcatcatcatcatcatcaccaccaccaccac |
30618030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
40 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
96 |
Q |
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|||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||| |
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| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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