View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6502_low_5 (Length: 487)

Name: NF6502_low_5
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6502_low_5
NF6502_low_5
[»] chr2 (17 HSPs)
chr2 (184-477)||(28741543-28741836)
chr2 (197-477)||(28733364-28733644)
chr2 (248-473)||(28717744-28717970)
chr2 (12-88)||(28741301-28741377)
chr2 (190-299)||(28670874-28670983)
chr2 (13-134)||(19616340-19616461)
chr2 (190-299)||(28642291-28642400)
chr2 (190-299)||(28675018-28675127)
chr2 (190-299)||(28691494-28691603)
chr2 (190-299)||(28651152-28651261)
chr2 (13-130)||(15342279-15342397)
chr2 (190-299)||(28696379-28696488)
chr2 (50-133)||(21626586-21626670)
chr2 (13-80)||(28719057-28719124)
chr2 (150-185)||(28741387-28741422)
chr2 (12-87)||(29800419-29800494)
chr2 (191-229)||(28717704-28717742)
[»] chr4 (4 HSPs)
chr4 (13-134)||(30040750-30040872)
chr4 (13-130)||(11420924-11421042)
chr4 (50-134)||(19365423-19365508)
chr4 (27-118)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (50-116)||(23846700-23846767)
chr6 (13-134)||(20736604-20736726)
chr6 (13-134)||(21994492-21994614)
chr6 (20-134)||(4073480-4073595)
chr6 (13-134)||(8612820-8612941)
chr6 (13-86)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (13-130)||(13225-13343)
[»] scaffold0136 (1 HSPs)
scaffold0136 (12-133)||(8636-8758)
[»] chr7 (11 HSPs)
chr7 (13-134)||(3587813-3587935)
chr7 (15-133)||(15170307-15170428)
chr7 (13-134)||(19393700-19393822)
chr7 (13-134)||(28130465-28130587)
chr7 (50-134)||(18259437-18259522)
chr7 (13-134)||(47167135-47167257)
chr7 (50-134)||(2935935-2936020)
chr7 (45-121)||(19388469-19388546)
chr7 (50-118)||(31190756-31190825)
chr7 (13-134)||(15999886-16000008)
chr7 (13-134)||(24443603-24443724)
[»] chr3 (4 HSPs)
chr3 (15-134)||(15526658-15526777)
chr3 (15-134)||(11787491-11787611)
chr3 (15-134)||(25979006-25979126)
chr3 (64-134)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (12-134)||(20100518-20100641)
chr5 (13-134)||(7865710-7865831)
chr5 (13-134)||(12765270-12765391)
chr5 (13-134)||(5097555-5097677)
chr5 (13-134)||(12704154-12704275)
chr5 (13-134)||(39535368-39535490)
chr5 (13-134)||(9812013-9812134)
chr5 (13-133)||(31652060-31652181)
chr5 (12-134)||(26245006-26245129)
chr5 (50-134)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (13-133)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (14-134)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (13-134)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (15-134)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (13-121)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (50-134)||(8727568-8727653)
chr1 (13-132)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (15-134)||(18835254-18835374)
chr8 (13-134)||(22659770-22659894)
chr8 (12-134)||(20539672-20539798)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 184 - 477
Target Start/End: Original strand, 28741543 - 28741836
Alignment:
Q  184 aactgtatctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgata 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28741543 aactgtatctctcaaaacaagatcatcatggattcctggtaaatcaattctacggatactaatctttgaatttcattcattgaatgaaacatcgttgata 28741642  T
Q  284 ttagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttatctagaaatgcactg 383  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28741643 ttagattctccacaattatgtgtcaattgtgattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttaactagaaatgcactg 28741742  T
Q  384 gtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgacaaagattctagtttcacctaacatgatgatgt 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28741743 gtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgacaaagattctagtttaacctaacatgatgatgt 28741836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 197 - 477
Target Start/End: Original strand, 28733364 - 28733644
Alignment:
Q  197 aaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagattctccac 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  28733364 aaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaattttattcattgactgaaacatcgttgatattagattatccac 28733463  T
Q  297 aattatgtgtcaattgggattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttatctagaaatgcactggtaatttagacag 396  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||     
T  28733464 aattacgtgtcaattgggattcatccatgattgatatacaaatcttggaagatatccctgtcaagttatttatctagaaatgcactgataatttagacaa 28733563  T
Q  397 aaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgacaaagattctagtttcacctaacatgatgatgt 477  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  28733564 aaaatatttgtagtaaagcatacatctaccttgtgtaccttcacatgacaaatattctagtttcacctaacatgatgatgt 28733644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 248 - 473
Target Start/End: Original strand, 28717744 - 28717970
Alignment:
Q  248 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggaag 347  Q
    ||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| |||| || ||||||||||    
T  28717744 tttgaatttgattcactgactgaaacatcattggtattagattctccacaattatgcgttaattgagattcatccatgattaatatacatatcttggaag 28717843  T
Q  348 atatccctgtcaagttttttatctag-aaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgaca 446  Q
    ||||||||||||||  ||| |||||| |||||||| | |||||||||  |||| | ||||||||||| || |||||||||||||||| |||||||||| |    
T  28717844 atatccctgtcaagaatttcatctagaaaatgcaccgataatttagagggaaattctttgtagtaaagcatacatctaccttgtgtaccttcacatgaaa 28717943  T
Q  447 aagattctagtttcacctaacatgatg 473  Q
    || |||||||||||||  |||||||||    
T  28717944 aatattctagtttcactaaacatgatg 28717970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 28741301 - 28741377
Alignment:
Q  12 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatt 88  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741301 atcatcagtctacatacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatt 28741377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 28670874 - 28670983
Alignment:
Q  190 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagat 289  Q
    |||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||| |||||||||| ||||||| | |||| |||  ||||||||||||    
T  28670874 atctctcaaaacaggatcatcatggattcctgttaagtcaattgtagggacactaagctttgaatttgattcatttactgaaccatgattgatattagat 28670973  T
Q  290 tctccacaat 299  Q
    | | ||||||    
T  28670974 tgttcacaat 28670983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 19616461 - 19616340
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| || | ||||||||||||| ||||||||| ||||||| | |||  ||||||||||||||| ||||||||    
T  19616461 tcatcagtctacatacataatagtctcgacgcttat-tattatcccaattcatattaaagcttgactacaaatacatttaagaatagtgttctttatgtt 19616363  T
Q  112 aatgtaatcttataattaagtca 134  Q
    ||||||||||||| |||||||||    
T  19616362 aatgtaatcttatgattaagtca 19616340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 28642291 - 28642400
Alignment:
Q  190 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagat 289  Q
    |||||||||| ||||||||||||||||||||  ||| |||||| |||||||||| | |||||||||| ||||||| | ||||||||| |||||| |||||    
T  28642291 atctctcaaagcaggatcatcatggattccttttaagtcaattgtagggatacttagctttgaatttgattcattcactgaaacatcattgatactagat 28642390  T
Q  290 tctccacaat 299  Q
    | | ||||||    
T  28642391 tgttcacaat 28642400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 28675018 - 28675127
Alignment:
Q  190 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagat 289  Q
    ||||||||||| ||||||||| |||||||||| ||| |||||| ||||||| |||| |||| ||||| ||||| ||| ||| | ||| ||||||||||||    
T  28675018 atctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggatgctaagctttaaatttgattcactgattgagagatcattgatattagat 28675117  T
Q  290 tctccacaat 299  Q
    | | ||||||    
T  28675118 tgttcacaat 28675127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 28691494 - 28691603
Alignment:
Q  190 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagat 289  Q
    ||||||||||||| |||||||||||||||||| ||  |||||| ||||||||||||  ||||||||| | ||||||| ||||| ||| || ||| |||||    
T  28691494 atctctcaaaacaagatcatcatggattcctgttaggtcaattgtagggatactaacatttgaatttgaatcattgactgaaaaatcattcatactagat 28691593  T
Q  290 tctccacaat 299  Q
    | | ||||||    
T  28691594 tgttcacaat 28691603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 28651152 - 28651261
Alignment:
Q  190 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagat 289  Q
    |||||||||| ||||||||||||||||||||  ||| |||||| |||||||||||| ||||| |||| ||||| ||  || | ||| |||||||| ||||    
T  28651152 atctctcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagat 28651251  T
Q  290 tctccacaat 299  Q
    | | ||||||    
T  28651252 tgttcacaat 28651261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 15342279 - 15342397
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    |||||| |||||| |||||||||||   ||| |||  ||||||||||||||||||||||  ||||||| | |||  || |||||||||||| |||||| |    
T  15342279 tcatcaatctacatacataatagtctccacgctttattattatcccaatttatattaaatcttgactacatatacattaaagaatagtgttctttatggt 15342378  T
Q  112 aatgtaatcttataattaa 130  Q
    |||||||||| || |||||    
T  15342379 aatgtaatctcatgattaa 15342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 28696379 - 28696488
Alignment:
Q  190 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagat 289  Q
    |||| |||||||| |||||| ||||||||||| ||  ||||||   |||||||| | |||||||||| | ||||||| ||||||||| |||||| |||||    
T  28696379 atctttcaaaacaagatcattatggattcctgttaggtcaattggtgggatacttagctttgaatttgaatcattgactgaaacatcattgatactagat 28696478  T
Q  290 tctccacaat 299  Q
    | | ||||||    
T  28696479 tgttcacaat 28696488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 21626670 - 21626586
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtc 133  Q
    |||||||||| ||||||||||| |||||||   |||| ||||||||||| |||| |||||||||||||||| | || ||||||||    
T  21626670 tattatcccattttatattaaaatttgacttcggatacttttaagaatattgttctttatgttaatgtaatgtcatgattaagtc 21626586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 28719057 - 28719124
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgacta 80  Q
    ||||||||||||| |||||||||||  ||||||||  ||||||| ||||||||| ||||  |||||||    
T  28719057 tcatcagtctacatacataatagtctctacgttttattattatctcaatttatactaaaacttgacta 28719124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 28741387 - 28741422
Alignment:
Q  150 actatctctttattaatcttacaacaagcataataa 185  Q
    |||||||||||||||||||||||||||| |||||||    
T  28741387 actatctctttattaatcttacaacaagtataataa 28741422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 29800494 - 29800419
Alignment:
Q  12 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatat 87  Q
    |||||||||||||| |||||||||||  | || |||  |||||||||||||| |||||||| |||| |||| ||||    
T  29800494 atcatcagtctacatacataatagtctttccgctttattattatcccaatttgtattaaagcttgaatatatatat 29800419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 28717704 - 28717742
Alignment:
Q  191 tctctcaaaacaggatcatcatggattcctggtaaatca 229  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  28717704 tctctcaaaacaggaccatcatggattcctagtaaatca 28717742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 30040750 - 30040872
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||| | |||||||||||   | | |||  ||||||||||||| ||||||| | |||||||||||||  ||||||||||||||| ||||||||    
T  30040750 tcatcagtctatatacataatagtctcgatgctttattattatcccaattcatattaacgcttgactatagatacatttaagaatagtgttctttatgtt 30040849  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  30040850 aatgtaatctcatgattaagtca 30040872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 11421042 - 11420924
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   | | |||  |||||||| |||| |||||||||||||||||  ||||  ||||||||||| ||| ||||||||    
T  11421042 tcatcagtctacatacataatagtctcgaagctttattattatcctaattcatattaaagtttgactacggatacatttaagaatagcgttctttatgtt 11420943  T
Q  112 aatgtaatcttataattaa 130  Q
    |||||||||| || |||||    
T  11420942 aatgtaatctaatgattaa 11420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 19365508 - 19365423
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 134  Q
    ||||| ||||||||||||||||| |||||||  ||||  ||||||||||| ||| |||| ||||||||||||| || |||||||||    
T  19365508 tattaccccaatttatattaaagcttgactacggatacatttaagaatagcgttctttacgttaatgtaatctcatgattaagtca 19365423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 9537973 - 9537881
Alignment:
Q  27 acataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 118  Q
    ||||||||||| || ||||||  | ||||||||| ||||||||||  ||||||| | |||  ||||||||||| ||| |||||||||||||||    
T  9537973 acataatagtctatgcgttttattgttatcccaaattatattaaatattgactacatatacatttaagaatagcgttctttatgttaatgtaa 9537881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 23846700 - 23846767
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgt 116  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||    
T  23846700 tattatcccaatttatattaaagtttgactacagatacttttaagaatagtgttctttatgtaaatgt 23846767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 20736604 - 20736726
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||||| ||  |||||||| ||||||| |||||  |||||||||| |||| ||||||||    
T  20736604 tcatcagtctacatacataatagtctcgacgctttattattatcccagttcttattaaagcttgactacagatacatttaagaataatgttctttatgtt 20736703  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  20736704 aatgtaatctcatgattaagtca 20736726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 21994614 - 21994492
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| | |||||||||  | || |||  |||||| |||||||||||||||| | |||||| ||||  ||||||||||||||| ||||| ||    
T  21994614 tcatcagtctacatatataatagtctttgcgctttattattattccaatttatattaaagctcgactatggatacatttaagaatagtgttctttatatt 21994515  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  21994514 aatgtaatctcatgattaagtca 21994492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 4073595 - 4073480
Alignment:
Q  20 tctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 118  Q
    |||||| |||||||||||  ||||||||  ||||||||  |||||||||||||||||||||  |||| ||||||||||| |||| |||   |||||||||    
T  4073595 tctacaaacataatagtctctacgttttattattatcctgatttatattaaagtttgactacggatacttttaagaataatgttctttccattaatgtaa 4073496  T
Q  119 tcttataattaagtca 134  Q
    ||| || |||||||||    
T  4073495 tctcatgattaagtca 4073480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 8612941 - 8612820
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  8612941 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 8612843  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  8612842 aatgtaatctcatgattaagtca 8612820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 22560460 - 22560533
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagata 86  Q
    ||||| |||||||  ||||||||||  | || |||  ||||||||||||||||||||||| |||||||| ||||    
T  22560460 tcatcggtctacatgcataatagtctctgcgctttattattatcccaatttatattaaagcttgactatggata 22560533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 13225 - 13343
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 111  Q
    ||||| ||||||| |||||||||||   ||| |||  ||||||||||||| ||||||||| |||||||| ||||  |||||||||| || ||||||||||    
T  13225 tcatcggtctacatacataatagtctcgacgctttattattatcccaattaatattaaagcttgactatggatacatttaagaatactgttttttatgtt 13324  T
Q  112 aatgtaatcttataattaa 130  Q
    |||||||||| || |||||    
T  13325 aatgtaatctcatgattaa 13343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 8758 - 8636
Alignment:
Q  12 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgt 110  Q
    ||||||| |||||| ||||| |||||  |||| |||  || |||| ||||||||||||||  ||||||| | ||| |||||||||||||||| |||||||    
T  8758 atcatcaatctacatacatattagtctctacgctttattactatctcaatttatattaaaacttgactacaaatacttttaagaatagtgttctttatgt 8659  T
Q  111 taatgtaatcttataattaagtc 133  Q
    ||||||||||| || ||||||||    
T  8658 taatgtaatctcatgattaagtc 8636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 3587935 - 3587813
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 111  Q
    ||||| ||||| | |||||||||||  |||| |||  ||||||||||||||||||||||| ||||||||||||   ||||||||||  | ||||||||||    
T  3587935 tcatcggtctatatacataatagtctctacgctttattattatcccaatttatattaaagcttgactatagattcatttaagaataacgttttttatgtt 3587836  T
Q  112 aatgtaatcttataattaagtca 134  Q
    || ||||||| || |||||||||    
T  3587835 aaagtaatctcatgattaagtca 3587813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 15170307 - 15170428
Alignment:
Q  15 atcagtctacacacataatagtcaatacgtttttatattatcccaatt--tatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 111  Q
    ||||||||||| | |||||||||  |||| |||  |||||||||||||  |||||||||| ||||||| | |||| ||||||||||  | ||||||||||    
T  15170307 atcagtctacatatataatagtctctacgctttattattatcccaatttatatattaaagcttgactacaaatatatttaagaataacgttttttatgtt 15170406  T
Q  112 aatgtaatcttataattaagtc 133  Q
    |||||||||| || ||||||||    
T  15170407 aatgtaatctcatgattaagtc 15170428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 19393700 - 19393822
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    |||| |||||||| |||||||||||   ||| |||   |||||||||| | ||||||||| ||||||| |||||  |||||||||||  || ||||||||    
T  19393700 tcattagtctacatacataatagtctcgacgctttataattatcccaactcatattaaagcttgactacagatacatttaagaatagcattctttatgtt 19393799  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  19393800 aatgtaatctcatgattaagtca 19393822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 28130587 - 28130465
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 111  Q
    |||||||||||||  ||||||||||   ||| |||  ||||||||  ||| ||||||||| ||||||| |||||  ||||||||||| | |||||||| |    
T  28130587 tcatcagtctacatgcataatagtctcgacgctttattattatccttattcatattaaagcttgactacagatacatttaagaatagcgttttttatgat 28130488  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  28130487 aatgtaatctcatgattaagtca 28130465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 18259437 - 18259522
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 134  Q
    |||||||| |||| ||||||||| |||||||| ||||  |||||||||| |||| |||||| ||||||||||| || |||||||||    
T  18259437 tattatcctaattcatattaaagcttgactatggatacatttaagaataatgttctttatgataatgtaatctcatgattaagtca 18259522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 47167135 - 47167257
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| ||||||| | |||  ||||||||||  ||| |||||| |    
T  47167135 tcatcagtctacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacaaatacatttaagaataacgttctttatgat 47167234  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || || ||||||    
T  47167235 aatgtaatctcatgataaagtca 47167257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 2936020 - 2935935
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 134  Q
    ||||||| ||||| ||||||||| |||||||  ||||  ||||||||||  ||| |||||||||||||||||| || |||||||||    
T  2936020 tattatcgcaattcatattaaagcttgactacggatacatttaagaataacgttctttatgttaatgtaatctcatgattaagtca 2935935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 19388546 - 19388469
Alignment:
Q  45 ttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatct 121  Q
    |||| ||||||||||||||||||| ||| ||||||| ||||| | |||| ||||||||| ||||| || |||||||||    
T  19388546 ttttttattatcccaatttatatttaagcttgactacagatactattaaaaatagtgttctttatattgatgtaatct 19388469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 31190756 - 31190825
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 118  Q
    ||||||||||||||||| ||||| |||||||  ||||| ||||| |||| |||| |||||||||||||||    
T  31190756 tattatcccaatttatactaaagcttgactaaggatatatttaataataatgttatttatgttaatgtaa 31190825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 16000008 - 15999886
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    |||||||||| || |||||| ||||   ||| |||  |||||||| |||| |||||||||||||||||  ||||  ||||| ||||| ||| |||| | |    
T  16000008 tcatcagtctgcatacataaaagtctcgacgctttattattatcctaattcatattaaagtttgactaaggatacatttaataatagcgttctttaaggt 15999909  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  15999908 aatgtaatctcatgattaagtca 15999886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 24443603 - 24443724
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||  |||  |||  ||| ||||| ||||||||||||| ||| |||  ||||  ||||||||||  ||| ||||||||    
T  24443603 tcatcagtctacatacataatagtctttacactttgttatcatccc-atttatattaaagcttggctacggatacatttaagaatatcgttctttatgtt 24443701  T
Q  112 aatgtaatcttataattaagtca 134  Q
    ||||||||||  | |||||||||    
T  24443702 aatgtaatctcgtgattaagtca 24443724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 15526777 - 15526658
Alignment:
Q  15 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 113  Q
    ||||||||||| |||||||||||  |||| |||  ||||||| || |||||||||||| ||||||| | ||   ||||||||||||||| ||||||||||    
T  15526777 atcagtctacaaacataatagtctctacgctttattattatctca-tttatattaaagcttgactacatatgcatttaagaatagtgttctttatgttaa 15526679  T
Q  114 tgtaatcttataattaagtca 134  Q
    |||||||| || |||||||||    
T  15526678 tgtaatctcatgattaagtca 15526658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 11787611 - 11787491
Alignment:
Q  15 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 113  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| ||||||| |||||  ||||||||||  ||| |||||| |||    
T  11787611 atcagtcaacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacagatacatttaagaataacgttctttatgataa 11787512  T
Q  114 tgtaatcttataattaagtca 134  Q
    |||||||| || |||||||||    
T  11787511 tgtaatctcatgattaagtca 11787491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 25979006 - 25979126
Alignment:
Q  15 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 113  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||| ||| |||||| |||    
T  25979006 atcagtcaacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacggatacatttaagaatagcgttctttatgataa 25979105  T
Q  114 tgtaatcttataattaagtca 134  Q
    |||||||| || |||||||||    
T  25979106 tgtaatctcatgattaagtca 25979126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 28088192 - 28088120
Alignment:
Q  64 atattaaag-tttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 134  Q
    ||||||||| ||||||||  ||| | ||||||||||||||| |||||| ||||||||||| || |||||||||    
T  28088192 atattaaagctttgactacggatctatttaagaatagtgttctttatgataatgtaatctcatgattaagtca 28088120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 20100518 - 20100641
Alignment:
Q  12 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgt 110  Q
    |||||||||||||| |||||||||||   ||| |||  |||||||||||||||||||||||||| ||||   |||  ||||||||||  ||| |||| ||    
T  20100518 atcatcagtctacatacataatagtcgtgacgctttattattatcccaatttatattaaagtttaactacgaatacatttaagaataacgttatttacgt 20100617  T
Q  111 taatgtaatcttataattaagtca 134  Q
    ||||||||||| || |||||||||    
T  20100618 taatgtaatctcatgattaagtca 20100641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 7865710 - 7865831
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  7865710 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 7865808  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  7865809 aatgtaatctcatgattaagtca 7865831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 12765270 - 12765391
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  12765270 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 12765368  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  12765369 aatgtaatctcatgattaagtca 12765391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 5097677 - 5097555
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||  ||||||| | |||  ||||||||||  ||| ||||||||    
T  5097677 tcatcagtctacatacataatagtctcgacgctttattattatcctaattcatattaaaacttgactacaaatacatttaagaataacgttctttatgtt 5097578  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  5097577 aatgtaatctcatgattaagtca 5097555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 12704154 - 12704275
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| ||||| |||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  12704154 tcatcagtctacatacatagtagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 12704252  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  12704253 aatgtaatctcatgattaagtca 12704275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 39535490 - 39535368
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||||||| |||||||||||||| ||  ||||  ||||||||||  ||| |||| | |    
T  39535490 tcatcagtctacatacataatagtcttgacgctttattattatcccaattcatattaaagtttgagtacggatacatttaagaatatcgttctttaaggt 39535391  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  39535390 aatgtaatctcatgattaagtca 39535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 9812013 - 9812134
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| ||||| |||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||| ||||||||| |||||| |    
T  9812013 tcatcagtctacatacatagtagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaataatagtgttctttatgat 9812111  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  9812112 aatgtaatctcatgattaagtca 9812134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 31652060 - 31652181
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| ||||| |||||  || |||||  |||| || ||||||||| ||||| | ||| || || | ||||||||||| | || ||||||||    
T  31652060 tcatcagtctacatacatagtagtctctatgttttactattgtctcaatttataataaagctcgaccatggaaacttttaagaataatattctttatgtt 31652159  T
Q  112 aatgtaatcttataattaagtc 133  Q
    ||||||||||||  ||||||||    
T  31652160 aatgtaatcttacgattaagtc 31652181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 26245129 - 26245006
Alignment:
Q  12 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgt 110  Q
    |||||||||||||| |||||||||||   ||| |||  ||||||||  ||| ||||||||| |||| || |||||  ||||||||||   || ||||||     
T  26245129 atcatcagtctacatacataatagtctcgacgctttattattatccttattcatattaaagcttgattacagatacatttaagaataacattctttatga 26245030  T
Q  111 taatgtaatcttataattaagtca 134  Q
    ||||||||||| || |||||||||    
T  26245029 taatgtaatctcatgattaagtca 26245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 26130006 - 26130091
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 134  Q
    ||||||||||||||||||||||| |||||||  ||||  |||||||| || ||| || ||||||| ||||| |||  |||||||||    
T  26130006 tattatcccaatttatattaaagcttgactacggatacatttaagaagagcgttcttaatgttaaagtaatattaggattaagtca 26130091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 83291 - 83412
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| ||||||||||| ||||  |||  ||||||| |||||||||||||| || |||||  |||| ||||||||||||| || ||| |||     
T  83291 tcatcagtctacatacataatagtctatacactttattattatctcaatttatattaaatttcgactacggatacttttaagaatagtattctttgtgtg 83390  T
Q  112 aatgtaatcttataattaagtc 133  Q
    ||| |||||| | |||||||||    
T  83391 aatttaatctcacaattaagtc 83412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 40265 - 40386
Alignment:
Q  14 catcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtta 112  Q
    |||||||||||| |||||||||||    || |||  ||||||| ||||||||||||||| |||||||| ||||  ||||||||||| ||| |||| ||||    
T  40265 catcagtctacatacataatagtctcggcgctttattattatctcaatttatattaaagcttgactatggatacatttaagaatagcgttctttacgtta 40364  T
Q  113 atgtaatcttataattaagtca 134  Q
    ||||| ||| || |||||||||    
T  40365 atgtattctcatgattaagtca 40386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 11806 - 11927
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    |||||| |||||| ||||||||||    ||| |||  |||||||| |||| ||||||||| ||||||| |||||  ||||||||||||||| |||||| |    
T  11806 tcatcaatctacatacataatagtttcgacgctttattattatcctaatt-atattaaagattgactacagatacatttaagaatagtgttctttatgat 11904  T
Q  112 aatgtaatcttataattaagtca 134  Q
    |||||||||| || |||||||||    
T  11905 aatgtaatctcatgattaagtca 11927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 45226 - 45346
Alignment:
Q  15 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 113  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||| ||| |||||| |||    
T  45226 atcagtcaacatacataatagtctcgacgctttattattatcctaattaatattaaagcttgactacggatacatttaagaatagcgttctttatgataa 45325  T
Q  114 tgtaatcttataattaagtca 134  Q
    |||||||| || |||||||||    
T  45326 tgtaatctcatgattaagtca 45346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 53791 - 53682
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    |||||| |||||| |||||||||||   ||  |||  |||||||| |||| ||||||||| |||| ||  ||||  ||||||||||||||| ||||||||    
T  53791 tcatcaatctacatacataatagtcttgacactttattattatcctaattcatattaaagcttgaatacggatacatttaagaatagtgttctttatgtt 53692  T
Q  112 aatgtaatct 121  Q
    ||||||||||    
T  53691 aatgtaatct 53682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 8727653 - 8727568
Alignment:
Q  50 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 134  Q
    ||||||| ||||| ||||||||||||||||| |||||  ||| ||||||  ||| |||||||||| |||||||||| ||| |||||    
T  8727653 tattatctcaattcatattaaagtttgactacagatagatttcagaataacgttctttatgttaaagtaatcttatgatttagtca 8727568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 633960 - 633840
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 111  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||  ||| ||||||||| |||||||  ||||  ||||| |||| |||| |||||| |    
T  633960 tcatcagtctacatacataatagtctcgacgctttgttattatccttattcatattaaagcttgactacggatacatttaaaaataatgttctttatgat 633861  T
Q  112 aatgtaatcttataattaagt 132  Q
    ||| |||||| || |||||||    
T  633860 aatttaatctcatgattaagt 633840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 18835374 - 18835254
Alignment:
Q  15 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgttttt-atgttaa 113  Q
    ||||||||||| |||||||||||   | | |||  ||||||  ||||  ||||||||| | ||||| |||||| ||||||||||  |||||| |||||||    
T  18835374 atcagtctacatacataatagtctcgatgctttattattatttcaatccatattaaagctggactacagatatatttaagaataacgttttttatgttaa 18835275  T
Q  114 tgtaatcttataattaagtca 134  Q
    |||||||| || |||||||||    
T  18835274 tgtaatctcatgattaagtca 18835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 22659770 - 22659894
Alignment:
Q  13 tcatcagtctacacacataatagtcaatacgtttttatattatccca-atttatattaaag-tttgactatagatatttttaagaatagtgtt-tttatg 109  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||   ||| ||||||||| ||||||||  ||||  ||||||||||||||| ||||||    
T  22659770 tcatcagtctacatacataatagtcttgacgctttattattatcctttattcatattaaagctttgactacggatacatttaagaatagtgttctttatg 22659869  T
Q  110 ttaatgtaatcttataattaagtca 134  Q
     ||||||||||| || |||||||||    
T  22659870 ataatgtaatctcatgattaagtca 22659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 20539672 - 20539798
Alignment:
Q  12 atcatcagtctacacacataatagtcaatacg--ttttta-tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-ttta 107  Q
    |||||||||||||| ||||||| ||| || ||  || ||| ||||||||||||||| ||||||| || |||| | || | ||||||||||  ||| ||||    
T  20539672 atcatcagtctacatacataatcgtctatgcgctttattattattatcccaatttacattaaagctttactacaaatgtatttaagaataacgttcttta 20539771  T
Q  108 tgttaatgtaatcttataattaagtca 134  Q
    |||||||||||||  || |||||||||    
T  20539772 tgttaatgtaatcacatgattaagtca 20539798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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