View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6502_low_6 (Length: 439)
Name: NF6502_low_6
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6502_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 10673602 - 10673738
Alignment:
| Q |
18 |
ctcctcatacatgcggctctgataatgaatgtgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccataattattgtgat |
117 |
Q |
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| T |
10673602 |
ctcctcagacgtgcggctctgataatgaatgtgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccataattattgtgat |
10673701 |
T |
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| Q |
118 |
atggtagtagcaacatcaagaccaaagaaatcaatga |
154 |
Q |
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| T |
10673702 |
atggtagtagcaacatcaagaccaaagaaatcaatga |
10673738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 10676699 - 10676844
Alignment:
| Q |
34 |
ctctgataatgaatgtgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccataattattgtgatatggtagtagcaacat |
133 |
Q |
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| T |
10676699 |
ctctgatgatgaaggcgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgctgtgatctg---gtagcaacat |
10676795 |
T |
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| Q |
134 |
caagaccaaagaaatcaatgagaggaaaccaaagacttccataagagta |
182 |
Q |
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| T |
10676796 |
caagaccaaagaaatcaatgagagggaaccaaagacttccataagagta |
10676844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 243 - 426
Target Start/End: Original strand, 10674040 - 10674223
Alignment:
| Q |
243 |
gtcgaatttaatgaccttggctcggtacacacggcttagggtttgataccgtcactaaactcagnnnnnnnnnnnnnnnnnaaggaaagcatctgataat |
342 |
Q |
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| T |
10674040 |
gtcgaatttaatgactttggctcggtacacacggcttagggtttgataccgtcactaaactcagtttttcttttcttttttaacgaaagcaactgataat |
10674139 |
T |
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| Q |
343 |
cannnnnnnaaacagcatctgacaattattagtgacagattggggaccacatcaaaggtttagaacgtaagtgtgaacacacct |
426 |
Q |
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| T |
10674140 |
catttttttaaacagcatctgacaattattagtgacagattggggaccacatcaaaggtttagaacgtaagtgtggacacacct |
10674223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 10673736 - 10673774
Alignment:
| Q |
206 |
tgatataaaggacgtcttcggatgaacctgaaatggagt |
244 |
Q |
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| T |
10673736 |
tgatataaaggacgtcttaggatgaacctgaaatggagt |
10673774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 10602460 - 10602517
Alignment:
| Q |
124 |
gtagcaacatcaagaccaaagaaatcaatgagaggaaaccaaagacttccataagagt |
181 |
Q |
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| T |
10602460 |
gtagcaacattaacaccaaagaaatcaatgaaagtgaaccaaaaatttccataagagt |
10602517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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