View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6502_low_7 (Length: 390)

Name: NF6502_low_7
Description: NF6502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6502_low_7
NF6502_low_7
[»] chr6 (3 HSPs)
chr6 (177-382)||(12692638-12692845)
chr6 (19-146)||(12692879-12693006)
chr6 (283-382)||(10992301-10992400)
[»] chr1 (3 HSPs)
chr1 (202-382)||(48440558-48440740)
chr1 (201-341)||(1611533-1611675)
chr1 (213-358)||(24136498-24136645)
[»] chr5 (1 HSPs)
chr5 (209-382)||(37505591-37505766)
[»] chr8 (2 HSPs)
chr8 (203-382)||(36596129-36596310)
chr8 (256-382)||(33539764-33539889)
[»] chr4 (3 HSPs)
chr4 (237-325)||(44356711-44356801)
chr4 (283-348)||(45419027-45419092)
chr4 (252-383)||(477329-477460)
[»] chr7 (1 HSPs)
chr7 (283-383)||(33714426-33714526)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 177 - 382
Target Start/End: Complemental strand, 12692845 - 12692638
Alignment:
Q  177 tttatacattacacatataggcagagagcaaatcttccatagtcacaagactatagacataagtttaaacacactca--taaaagtaaaatataaagtta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  12692845 tttatacattacacatataggcagagagcaaatcttccatagtcacaagactatagacataagtttaaacacactcacataaaagcaaaatataaagtta 12692746  T
Q  275 actttatcattatttttgaaataattaaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgggcttgtgactatctaa 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12692745 actttatcattatttttgaaataattaaaagaatatggtgtggaatttatattttgtgagtgtgcctaaaagatttgtatttgggcttgtgactatctaa 12692646  T
Q  375 gaataatc 382  Q
    ||||||||    
T  12692645 gaataatc 12692638  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 12693006 - 12692879
Alignment:
Q  19 ataaatgagccatgagggtacatcattaactgttgcgttttatgtctaaaactgtggctatgtaacagaatatttattcctatccgtaggtggtaaatgc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12693006 ataaatgagccatgagggtacatcatcaactgttgcgttttatgtctaaaactgtggctatgtaacagaatatttattcctatccgtaggtggtaaatgc 12692907  T
Q  119 aaggcaaccaatgttctagggtacattt 146  Q
    ||||||||||||||||||||||||||||    
T  12692906 aaggcaaccaatgttctagggtacattt 12692879  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 382
Target Start/End: Complemental strand, 10992400 - 10992301
Alignment:
Q  283 attatttttgaaataattaaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgggcttgtgactatctaagaataatc 382  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||   |||||||||| | |||||||||||| |||||||  || |||||||||||    
T  10992400 attacttttgaaataattaaaagaataagatgtagaatttatattttgtaggtgtgcctaagaaatttgtatttggtcttgtgagcatgtaagaataatc 10992301  T

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Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 202 - 382
Target Start/End: Original strand, 48440558 - 48440740
Alignment:
Q  202 gagcaaatcttccatagtcacaagactatagacataagtttaaacacactca--taaaagtaaaatataaagttaactttatcattatttttgaaataat 299  Q
    |||||| |||||||| ||||||||||||| |||| |||||||||||||||||  |||||||||||||| || ||||||||||||||  ||||||||||||    
T  48440558 gagcaagtcttccatggtcacaagactatggacacaagtttaaacacactcacataaaagtaaaatatgaaattaactttatcattgcttttgaaataat 48440657  T
Q  300 taaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgggcttgtgactatctaagaataatc 382  Q
    |||||||||| | |||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  48440658 taaaagaataagttgtggaatttatattttgtgaatgtgcctaaaaaatttgtatttggtcttgtgactatctaagaataatc 48440740  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 1611675 - 1611533
Alignment:
Q  201 agagcaaatcttccatagtcacaagactatagacataagtttaaacacactca--taaaagtaaaatataaagttaactttatcattatttttgaaataa 298  Q
    ||||||| |||| ||||||||||||| ||| |||| ||||||| |||||||||  |||||| |||| ||||| |||||||||| |||| |||||||||||    
T  1611675 agagcaagtctttcatagtcacaagattatggacacaagtttagacacactcacataaaagcaaaacataaaattaactttattattacttttgaaataa 1611576  T
Q  299 ttaaaagaatatggtgtggaatttatattttgagagtgtgcct 341  Q
    ||||||||||| | |||||||||||||||||| ||||||||||    
T  1611575 ttaaaagaataagatgtggaatttatattttgtgagtgtgcct 1611533  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 358
Target Start/End: Original strand, 24136498 - 24136645
Alignment:
Q  213 ccatagtcacaagactatagacataagtttaaacacactca----taaaagtaaaatataaagttaactttatcattatttttgaaataattaaaagaat 308  Q
    ||||||| ||||||||||  ||| ||||||| ||||||| |    |||| |||||||||||| |||||||||| |||| ||||||||||||||||||||     
T  24136498 ccatagttacaagactatgaacacaagtttagacacacttacatataaaggtaaaatataaaattaactttattattacttttgaaataattaaaagaa- 24136596  T
Q  309 atggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgg 358  Q
    | | |||||||||||| ||||| |||| ||||||||| ||||||| ||||    
T  24136597 aagatgtggaatttat-ttttgtgagtatgcctaaaaaatttgtagttgg 24136645  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 209 - 382
Target Start/End: Original strand, 37505591 - 37505766
Alignment:
Q  209 tcttccatagtcacaagactatagacataagtttaaacacactca--taaaagtaaaatataaagttaactttatcattatttttgaaataattaaaaga 306  Q
    ||||||||||| ||||||| || |||| || |||||||| |||||  |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  37505591 tcttccatagttacaagacaattgacaaaaatttaaacatactcacataaaagtaaaatataaagttaactttattattacttttgaaataattaaaaga 37505690  T
Q  307 atatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgggcttgtgactatctaagaataatc 382  Q
    ||||| |||||| ||||||||||| |||||| ||||||||||| |||||| ||  ||||| |||||||| ||||||    
T  37505691 atatgatgtggagtttatattttgtgagtgtacctaaaagattcgtatttaggtatgtgagtatctaagtataatc 37505766  T

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Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 203 - 382
Target Start/End: Complemental strand, 36596310 - 36596129
Alignment:
Q  203 agcaaatcttccatagtcacaagactatagacataagtttaaacacactca--taaaagtaaaatataaagttaactttatcattatttttgaaataatt 300  Q
    ||||| |||| ||||||||||||||||| |||| |||||||||||||||||  |||||| |||||||||||||||||||||||||| |||| ||||||||    
T  36596310 agcaagtctttcatagtcacaagactatggacacaagtttaaacacactcacataaaagcaaaatataaagttaactttatcattactttttaaataatt 36596211  T
Q  301 aaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgggcttgtgactatctaagaataatc 382  Q
    ||||||||| | |||| || |||||||||  |||||||||||||  ||||||| ||||| |  ||| |||||||||||||||    
T  36596210 aaaagaataagatgtgaaaattatattttttgagtgtgcctaaattatttgtaattgggttgatgagtatctaagaataatc 36596129  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 256 - 382
Target Start/End: Original strand, 33539764 - 33539889
Alignment:
Q  256 aaagtaaaatataaagttaactttatcattatttttgaaataattaaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatt 355  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||| |||||| | |  ||||||||||||| |||||||  |||||||||||||||    
T  33539764 aaagcaaaatataaagttaactttatcattctttt-gaaataattaaaaaaatatgatataaaatttatattttgtgagtgtgtttaaaagatttgtatt 33539862  T
Q  356 tgggcttgtgactatctaagaataatc 382  Q
    |||||||||||||||||||||||||||    
T  33539863 tgggcttgtgactatctaagaataatc 33539889  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 44356801 - 44356711
Alignment:
Q  237 aagtttaaacacactca--taaaagtaaaatataaagttaactttatcattatttttgaaataattaaaagaatatggtgtggaatttata 325  Q
    |||||||||||||||||  |||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||    
T  44356801 aagtttaaacacactcacataaaagcaaaatacaaagttaactttatcattacttttgaaataattaagagaatatgatgtgaaatttata 44356711  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 45419092 - 45419027
Alignment:
Q  283 attatttttgaaataattaaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagat 348  Q
    |||||||||||||||||||||||||||    || ||||| |||||||| |||||||||||| ||||    
T  45419092 attatttttgaaataattaaaagaataaaaagtagaattaatattttgtgagtgtgcctaagagat 45419027  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 477329 - 477460
Alignment:
Q  252 cataaaagtaaaatataaagttaactttatcattatttttgaaataattaaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttg 351  Q
    |||||||| |||||||||| |||||||| | |||| |||| |||||||||||| ||||   | || | ||||||||||  |||| ||| ||| | |||||    
T  477329 cataaaagaaaaatataaaattaacttttttattacttttaaaataattaaaataataatatatgaagtttatattttatgagtatgcataagaaatttg 477428  T
Q  352 tatttgggcttgtgactatctaagaataatct 383  Q
    |||||   |||||||| || |||||| |||||    
T  477429 tatttcatcttgtgaccatataagaacaatct 477460  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 383
Target Start/End: Complemental strand, 33714526 - 33714426
Alignment:
Q  283 attatttttgaaataattaaaagaatatggtgtggaatttatattttgagagtgtgcctaaaagatttgtatttgggcttgtgactatctaagaataatc 382  Q
    |||| |||||||||||||| |||||||   ||||||||| |||||||  |||||| | |||||  ||| ||||||  ||||||| |||  ||||||||||    
T  33714526 attacttttgaaataattagaagaataaaatgtggaattaatattttctgagtgtccataaaatttttatatttgatcttgtgattatagaagaataatc 33714427  T
Q  383 t 383  Q
    |    
T  33714426 t 33714426  T

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