View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6503_high_1 (Length: 547)
Name: NF6503_high_1
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6503_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Complemental strand, 4620797 - 4620294
Alignment:
| Q |
11 |
catcatcaaattgtgggtttattatgatgctttcatctccagtagaaacacatgcttctgtacttatgaacttctgaaatacgaggaaaaggtacaccag |
110 |
Q |
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| T |
4620797 |
catcctcaaattgtgggtttattatgatgctttcatctccagtagaaacacatgcttctgtacttatgaacttctgaaatacgaggaaaaggtacaccag |
4620698 |
T |
|
| Q |
111 |
ttagtggtgttattaaaacataaagatttcacaaaaagttaaagagtgaaacaataataggctcaatacaagttcaatttaacaattaaagaagtaataa |
210 |
Q |
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| T |
4620697 |
ttagtggtgttattaaaacataaagatttcacaaaaagttaaagagtgaaacaataataggctcaatacaagttcaatttaacaattaaagaagtaataa |
4620598 |
T |
|
| Q |
211 |
aaactttgccaatatgtagaattccataaagaaataacagtatctgaaatgcataatttcatgtatgatatacattgtcatttggaatggaacagttgat |
310 |
Q |
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| T |
4620597 |
aatttttgccaatatgtagaattccataaagaaataacagtatctgaaatgcataatttcatgtatgatatacattgtcatttggaatggaacagttgat |
4620498 |
T |
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| Q |
311 |
ctctactgatcttataagcaagtcaattccaggagcaggtccttccaaataaaatacaacccgatcgggtttagtggacagtgaaaatgttccttctaac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4620497 |
ctctactgatcttataagcaagtcaattccaggagcaggtccttccaaataaaatacaacccgatcgggtttagtggacagtgaaaatgttccttctaac |
4620398 |
T |
|
| Q |
411 |
ttttcccagctacccttcataacagaagatctgtagaaaataatggtgaacatgtaagggaattttcctcaatttctttaaaagatagatgtaatgaaat |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4620397 |
ttttcccagctacccttcataacagaagatctgtagaaaataatggtcaacatgtaagggaattttcctcaatttctttaaaagatagatgtaatgaaat |
4620298 |
T |
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| Q |
511 |
tacg |
514 |
Q |
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|||| |
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| T |
4620297 |
tacg |
4620294 |
T |
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