View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6503_high_5 (Length: 404)
Name: NF6503_high_5
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6503_high_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 73 - 404
Target Start/End: Complemental strand, 9158983 - 9158653
Alignment:
| Q |
73 |
gttcgacgaaggaatgagaactagtaataacttaaaagatttcattttagatttctccttgagactcaatatgtgttgggtcggccctcctnnnnnnnnn |
172 |
Q |
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| T |
9158983 |
gttcgacgaaggaatgagaactagtaataacttaaa-gacttcattttagatttctccttcagactcaatatgtgttgggtcggccctcctaaaaaatta |
9158885 |
T |
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| Q |
173 |
nnnnnnnnnnggtctaggttcgagtctcgccaatactaattttgtggaaatagtttgccttcttcaagaataatatttaaactactttaaatcctaggac |
272 |
Q |
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| T |
9158884 |
attaaaaaaagatctaggttcgagtctcgccaatactaattttgtggaaatagtttgccttctttaagaataatatttaaactactttaaatcctaggac |
9158785 |
T |
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| Q |
273 |
ggcaacatctgcattgattgcatgactgcataatgcaatctaaatcccactctaattactttaatcacagtagactagttcaatgttccttccaaagtta |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9158784 |
ggcaacatctgcattgattgcatgactgcataatgcaatctaaatcccactctaattactttaatcacagtagactagttcaatgttccttccaaagtta |
9158685 |
T |
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| Q |
373 |
acaaaatttaataatcagcgaaagacggcaaa |
404 |
Q |
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| T |
9158684 |
acaaaatttaataatcagcgaaagacggcaaa |
9158653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 404
Target Start/End: Complemental strand, 9147450 - 9147356
Alignment:
| Q |
310 |
atctaaatcccactctaattactttaatcacagtagactagttcaatgttccttccaaagttaacaaaatttaataatcagcgaaagacggcaaa |
404 |
Q |
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| T |
9147450 |
atctaaatcccactctagttactttaatcataggagactagttcaatgttccttccaaagttaacaaaacttaataaacagcgaaagacggcaaa |
9147356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 9159720 - 9159655
Alignment:
| Q |
91 |
aactagtaataacttaaaagatttcattttagatttctccttgagactcaatatgtgttgggtcgg |
156 |
Q |
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| T |
9159720 |
aactagtaataacttaaaagacttcattttagatttctccttcagcctcaatatgcattgggtcgg |
9159655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 33670133 - 33670065
Alignment:
| Q |
91 |
aactagtaataacttaaaagatttcattttagatttctccttgagactcaatatgtgttgggtcggccc |
159 |
Q |
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| T |
33670133 |
aactaataataacttaaaaggcctcattttagatttcgccttgagcctcgatatgtgttgggccggccc |
33670065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 2806106 - 2806167
Alignment:
| Q |
91 |
aactagtaataacttaaaagatttcattttagatttctccttgagactcaatatgtgttggg |
152 |
Q |
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| T |
2806106 |
aactaataataacttaaaagacctcattttagatttcgtcttaagcctcaagatgtgttggg |
2806167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 54315888 - 54315950
Alignment:
| Q |
97 |
taataacttaaaagatttcattttagatttctccttgagactcaatatgtgttgggtcggccc |
159 |
Q |
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| T |
54315888 |
taataacttaaaaggcctcattttagatttcgccttgagcatcaatatgtgttgggccggccc |
54315950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 52032051 - 52032014
Alignment:
| Q |
114 |
tcattttagatttctccttgagactcaatatgtgttgg |
151 |
Q |
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| T |
52032051 |
tcattttagatttttccttgagcctcaatatgtgttgg |
52032014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 16527591 - 16527652
Alignment:
| Q |
91 |
aactagtaataacttaaaagatttcattttagatttctccttgagactcaatatgtgttggg |
152 |
Q |
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| T |
16527591 |
aactaataataactttaaaggtctcattttggatttcaccttgagcctcaatatgtgttggg |
16527652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 36467568 - 36467628
Alignment:
| Q |
91 |
aactagtaataacttaaaagatttcattttagatttctccttgagactcaatatgtgttgg |
151 |
Q |
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||||||||||||||||||| |||| |||||||||| | ||||| |||||||||||||| |
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| T |
36467568 |
aactagtaataacttaaaatgcttcaatttagatttcgcgttgagcatcaatatgtgttgg |
36467628 |
T |
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