View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6503_low_12 (Length: 237)
Name: NF6503_low_12
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6503_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9158619 - 9158410
Alignment:
| Q |
18 |
aaaaccatataaatttataaaaaccttctctattgctacaaagaaatgcaaggaacgagtcaatttaaat----aaacacaatgaaactgaacacaaacc |
113 |
Q |
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| T |
9158619 |
aaaaccatataaatttataaaaaccttctctattgctacaaagaaatgcaaggaacgagtcaattgaaattaataaacacaatgaaactgaacacaaacc |
9158520 |
T |
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| Q |
114 |
tcacgcaattatgcacaattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9158519 |
tcacgcaattatgcacaattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacac |
9158420 |
T |
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| Q |
214 |
atgtggaaat |
223 |
Q |
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|||||||||| |
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| T |
9158419 |
atgtggaaat |
9158410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 9221036 - 9220860
Alignment:
| Q |
50 |
ttgctacaaagaaatgcaaggaacgagtcaatttaaataaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatat |
149 |
Q |
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| T |
9221036 |
ttgctacaaaaaattacaaggaactactccattgaaataaacggaatgaaactgaacagaaacctcacgcaattatgcacaattttagtagttacaatat |
9220937 |
T |
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| Q |
150 |
caattg---caagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtggaaat |
223 |
Q |
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| T |
9220936 |
ccatggtaacaatagtatttgcatccaatgaatccctttcttcatccttacccggttgcaaaaacacatgtggaaat |
9220860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 9203572 - 9203411
Alignment:
| Q |
62 |
aatgcaaggaacgagtcaatttaaataaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatatcaattg---caa |
158 |
Q |
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||||||| |||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| || | ||| |
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| T |
9203572 |
aatgcaaagaactagtcaattgaaatacacacaatgaaactgaacacaaagctcacgcaattatgcacaattttattacttacaatattcatggtaacaa |
9203473 |
T |
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| Q |
159 |
gagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtgga |
220 |
Q |
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| T |
9203472 |
tagtatttgcatccaatgaatcctttccttcatctctacccggttgcaaaaacacatgtgga |
9203411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 9176515 - 9176373
Alignment:
| Q |
84 |
aaataaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatatcaattg---caagagtatttgcatctgatgaatc |
180 |
Q |
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||||| || ||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||| || | ||| |||||||||||| ||||||| |
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| T |
9176515 |
aaatacacgcaatgaaacagaacacaaacctcacgcaattatgcacaattttagtacttacaatatccatggtcacaatagtatttgcatccaatgaatc |
9176416 |
T |
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| Q |
181 |
cttttcttcatccctacctggttgcaaaaacacatgtggaaat |
223 |
Q |
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| T |
9176415 |
cttttctttatccctacctgggtgcaaagacacatgtggaaat |
9176373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 9113905 - 9114040
Alignment:
| Q |
88 |
aaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttct |
187 |
Q |
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|||||||||||||| |||||||| ||||| ||| ||||| ||||||||| || | |||| | || | || | ||| |||||| |||||||||||||| |
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| T |
9113905 |
aaacacaatgaaacaaaacacaaagctcacacaactatgccaaattttaatggtaacaataaccatggtaacactatctgcatccaatgaatccttttct |
9114004 |
T |
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| Q |
188 |
tcatccctacctggttgcaaaaacacatgtggaaat |
223 |
Q |
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|||||| |||| |||||||||||||||||||||||| |
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| T |
9114005 |
tcatccttacccggttgcaaaaacacatgtggaaat |
9114040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 9164618 - 9164528
Alignment:
| Q |
130 |
aattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtgga |
220 |
Q |
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||||||||||||| |||||| || | ||||||||||||||| ||||| || || |||||||||| || ||||||||||||||||||||| |
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| T |
9164618 |
aattttaattgttgcaatatccatggtaagagtatttgcatccgatgagtctcttccttcatccctgcccggttgcaaaaacacatgtgga |
9164528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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