View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6503_low_13 (Length: 228)

Name: NF6503_low_13
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6503_low_13
NF6503_low_13
[»] chr5 (1 HSPs)
chr5 (18-204)||(9363167-9363345)
[»] chr3 (9 HSPs)
chr3 (18-204)||(44541427-44541611)
chr3 (133-214)||(6776014-6776095)
chr3 (133-214)||(6776281-6776362)
chr3 (136-204)||(19341910-19341978)
chr3 (149-204)||(23291457-23291512)
chr3 (149-205)||(112745-112801)
chr3 (145-204)||(44542015-44542075)
chr3 (139-207)||(47667328-47667396)
chr3 (138-206)||(47667823-47667891)
[»] chr4 (6 HSPs)
chr4 (145-204)||(42289255-42289314)
chr4 (136-209)||(53731285-53731358)
chr4 (133-204)||(818520-818591)
chr4 (132-187)||(14079964-14080019)
chr4 (147-204)||(42289881-42289936)
chr4 (135-188)||(14079554-14079607)
[»] chr2 (2 HSPs)
chr2 (145-204)||(11523891-11523951)
chr2 (136-204)||(597199-597267)
[»] chr8 (1 HSPs)
chr8 (136-204)||(26936797-26936865)
[»] scaffold0542 (1 HSPs)
scaffold0542 (145-206)||(9752-9814)
[»] chr7 (2 HSPs)
chr7 (139-195)||(14078268-14078324)
chr7 (139-195)||(14388296-14388352)
[»] chr1 (1 HSPs)
chr1 (138-206)||(3902842-3902910)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 9363167 - 9363345
Alignment:
Q  18 tcatggagactatgatggaagagatggagaacaataaagcggagaagcaaagaattgagaagtgagaatgatgtttttctgaattaattaattcaactat 117  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9363167 tcatggagactatgattgaagagatgtagaacaatagagcggagaagcaaagaattgagaagtgagaatgatgtttttctgaattaattaattcaactat 9363266  T
Q  118 cctatccagaaaggcatgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9363267 --------gaaaggcatgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 9363345  T

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Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 44541611 - 44541427
Alignment:
Q  18 tcatggagactatgatggaagagatggagaacaataaagcggagaagcaaagaattgagaagtgagaatgatgtttttctgaattaattaattcaactat 117  Q
    ||||||||||| |||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  44541611 tcatggagactgtgattgaagagatggagaacaatagggcgaagaagcaaagaattgagaagtgagaatgatgtttttttta-ttaattaattcaactat 44541513  T
Q  118 cctatccagaaaggcatgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44541512 cctattcagaaaggcatgatgtggcaaaattctattggatgactgtgtaaagtgcatttac-ctgtcagagcactacaattaaactc 44541427  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 6776095 - 6776014
Alignment:
Q  133 atgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactcatatatatat 214  Q
    ||||||||||| | |  ||||||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||||||    
T  6776095 atgatgtggcagattgttattggatgactgtgtaaactatctttacactgtcagtgcactacaattaaactcatatatatat 6776014  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 6776281 - 6776362
Alignment:
Q  133 atgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactcatatatatat 214  Q
    ||||||||||| | |  ||||||||||||||||||| |   ||||||||||||| ||||||||||||||||| |||||||||    
T  6776281 atgatgtggcagattgttattggatgactgtgtaaactatctttacactgtcagtgcactacaattaaactcgtatatatat 6776362  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 19341978 - 19341910
Alignment:
Q  136 atgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    ||||||||||||  |||||| |||||||||||||| | ||||||| ||||| |||| ||||||||||||    
T  19341978 atgtggcaaaatgttattggctgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactc 19341910  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 23291457 - 23291512
Alignment:
Q  149 ctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    |||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||    
T  23291457 ctattggatgactgtgcaaagagcatttacactgtcggtgcaccacaattaaactc 23291512  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 112745 - 112801
Alignment:
Q  149 ctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactca 205  Q
    ||||||||||| ||||||||| || ||||||||||| | |||| | |||||||||||    
T  112745 ctattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactca 112801  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 44542015 - 44542075
Alignment:
Q  145 aattctattggatgactgtgtaaagtgca-tttacactgtcagagcactacaattaaactc 204  Q
    |||| ||||||||||| ||||||| |  | ||||||||||||||||||| |||||||||||    
T  44542015 aattttattggatgacagtgtaaaatatactttacactgtcagagcactccaattaaactc 44542075  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 47667396 - 47667328
Alignment:
Q  139 tggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactcata 207  Q
    ||||| ||| ||||||| ||| |||||||  ||  ||||||||||||| |||||| |||||||||||||    
T  47667396 tggcacaatgctattggttgagtgtgtaatatgtctttacactgtcagtgcactataattaaactcata 47667328  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 47667823 - 47667891
Alignment:
Q  138 gtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactcat 206  Q
    |||||| ||| ||||||| ||| |||||||  ||  ||||||||||||| |||||| ||||||||||||    
T  47667823 gtggcagaatgctattggttgagtgtgtaatatgtctttacactgtcagtgcactataattaaactcat 47667891  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 42289314 - 42289255
Alignment:
Q  145 aattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42289314 aattttattggatgattgtgtaaagtgcatttacactgtcagagcactacaattaaactc 42289255  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 53731285 - 53731358
Alignment:
Q  136 atgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactcatata 209  Q
    ||||||||||||  |||||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||||||    
T  53731285 atgtggcaaaatgttattggttgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactcatata 53731358  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 818520 - 818591
Alignment:
Q  133 atgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    ||||||||||||| |  ||||||||||||||||||| |   ||||||||||||  |||||||||||||||||    
T  818520 atgatgtggcaaattgttattggatgactgtgtaaactatctttacactgtcaatgcactacaattaaactc 818591  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 14079964 - 14080019
Alignment:
Q  132 catgatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcaga 187  Q
    |||||||||||| ||||||||||  |||| ||||||||||  ||||||||||||||    
T  14079964 catgatgtggcagaattctattgtttgacagtgtaaagtgattttacactgtcaga 14080019  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 42289881 - 42289936
Alignment:
Q  147 ttctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    |||| |||||||||||||||||||||  ||||||||||  ||| ||||||||||||||    
T  42289881 ttctgttggatgactgtgtaaagtgccgttacactgtc--agccctacaattaaactc 42289936  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 14079607 - 14079554
Alignment:
Q  135 gatgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagag 188  Q
    ||||||||| ||||||||||| |||| |||||||| |  |||||||||||||||    
T  14079607 gatgtggcataattctattggttgacagtgtaaagggattttacactgtcagag 14079554  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 11523951 - 11523891
Alignment:
Q  145 aattctattggatgactgtgtaaagtgca-tttacactgtcagagcactacaattaaactc 204  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  11523951 aattctattggatgacagtgtaaagtgcactttacactgtcagagcactacaattaaactc 11523891  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 597199 - 597267
Alignment:
Q  136 atgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    ||||||||||||  |||||  |||||||||||||| | ||||||| ||||| |||| ||||||||||||    
T  597199 atgtggcaaaatgttattgactgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactc 597267  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 26936865 - 26936797
Alignment:
Q  136 atgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 204  Q
    ||||||||||||  |||||| |||||||||||||| | ||||||| ||||| |||| ||||||||||||    
T  26936865 atgtggcaaaatgttattggctgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactc 26936797  T

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Target: scaffold0542 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 9814 - 9752
Alignment:
Q  145 aattctattggatgactgtgtaaagtgca-tttacactgtcagagcactacaattaaactcat 206  Q
    |||| ||||||||||| |||||||||  | ||||||||||||||||||| |||||||||||||    
T  9814 aattttattggatgacagtgtaaagtatactttacactgtcagagcactccaattaaactcat 9752  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 14078324 - 14078268
Alignment:
Q  139 tggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactaca 195  Q
    ||||||||||||||||| ||| |||||||  ||||||||||| ||||| ||||||||    
T  14078324 tggcaaaattctattggttgattgtgtaatatgcatttacaccgtcagtgcactaca 14078268  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 14388352 - 14388296
Alignment:
Q  139 tggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactaca 195  Q
    ||||||||||||||||| ||| |||||||  ||||||||||| ||||| ||||||||    
T  14388352 tggcaaaattctattggttgattgtgtaatatgcatttacaccgtcagtgcactaca 14388296  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 3902842 - 3902910
Alignment:
Q  138 gtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactcat 206  Q
    |||||| ||| ||||||| ||| |||||||  ||| ||||||||||||| |||||| ||||||||||||    
T  3902842 gtggcagaatgctattggttgagtgtgtaatatgcttttacactgtcagtgcactataattaaactcat 3902910  T

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