View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6503_low_2 (Length: 517)
Name: NF6503_low_2
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6503_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 4620769 - 4621222
Alignment:
| Q |
1 |
catcataataaacccacaatttgaggatggcctgaataattggtctggaaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgtt |
100 |
Q |
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| T |
4620769 |
catcataataaacccacaatttgaggatggcctgaataattggtctggaaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgtt |
4620868 |
T |
|
| Q |
101 |
ccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttctggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcct |
200 |
Q |
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| T |
4620869 |
ccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttctggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcct |
4620968 |
T |
|
| Q |
201 |
atgagatcactgctttagttcgaatatatggcaacaatgtcactaatgccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagta |
300 |
Q |
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| T |
4620969 |
atgagatcactgctttagttcgaatatatggcaacaatgtcactaatgccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagta |
4621068 |
T |
|
| Q |
301 |
tataggcattgcaaagttagtcttcacattatttttgctatagatttaattcatatacatcgtcctagaaatattttttacactgttagtcaattgtatg |
400 |
Q |
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| T |
4621069 |
tataggcattgcaaagttagtcttcacattatttttgctatagatttaattcatatacatcgtcctagaaatattttttacactgttagtcaattgtatg |
4621168 |
T |
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| Q |
401 |
attcagccatgaatttcagatagactcttgaggcatatgatttttctgtttatt |
454 |
Q |
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| T |
4621169 |
attcagccatgaatttcagatagactcttgaggcatatgatttttctgtttatt |
4621222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 4621440 - 4621503
Alignment:
| Q |
438 |
tgatttttctgtttattattcttgaaactggataaaaataacaaaaggaaacttactgtagtat |
501 |
Q |
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| T |
4621440 |
tgatttttctgtttattattcttgaaactggataaaaataacaaaaggaaacttactgtagtat |
4621503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 47887744 - 47887446
Alignment:
| Q |
23 |
gaggatggcctgaataattggtctggaaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgttccaaagtctgggaaatattttg |
122 |
Q |
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| T |
47887744 |
gaggatggcttgaataattggactggaagaggctgcaagattgcagtacatgaatccatggcaaatgggaaaatccttccgaaatccgggaaattctttg |
47887645 |
T |
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| Q |
123 |
catgcgcaacagaacgaacacagttctggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcctatgagatcactgctttagttcg |
222 |
Q |
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||| ||||| ||||| ||||| |||||||||||||||||| || || |||||||| |||||||||||| | ||||||||| |||||||||||||||| |
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| T |
47887644 |
catctgcaaccgaacgcacacaaagctggaatggaattcagcaagaaatcactggacgagtgcagcgcaagcttgcctatgaggtcactgctttagttcg |
47887545 |
T |
|
| Q |
223 |
aatatatggcaacaatgtcactaatgccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagtatataggcattgcaaagttagt |
321 |
Q |
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| T |
47887544 |
gatatttgggaacaatgtcactacttctgatgtacgtgctacgttgtatgttcaaaaaccagatcttcgagagcaatatataggcattgccaagttagt |
47887446 |
T |
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