View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6503_low_3 (Length: 495)
Name: NF6503_low_3
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6503_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 478
Target Start/End: Complemental strand, 44702774 - 44702298
Alignment:
| Q |
7 |
gtgagaagaaagaaaaagggagagaatatgaatgtaatgtaa-----aattaaagaaaccttcaaaaataatggaaattattttagtaaaagatatgctt |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44702774 |
gtgataagaaagaaaaagggagagaatatgaatgtattgtaatgtcaaattaaagaaaccttcaaaaataatggaaattattttagtaaaagatatgctt |
44702675 |
T |
|
| Q |
102 |
tatcaatgtttttattggtcaagtggaatcatcttaccctcgaaagaaaatgatttgggacatcgagaacttcgaactaaggaaaaattatgcttaatct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44702674 |
tatcaatgtttttattggtcaagtggaatcatcttaccctcgaaagaaaatgatttgggacatcgagaacttcgaactaaggaaaaattatgcttaatct |
44702575 |
T |
|
| Q |
202 |
taaaaccaaaacatagtttcatagatggtccaaaaatggccaaaactgtgggtgtatcatgatagaattattcactgtcaaaagccatagttacggtaga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44702574 |
taaaaccaaaacatagtttcatagatggtccaaaaatggccaaaactgtgggtgtatcatgatagaattattcactgtcaaaagccatagttacggtaga |
44702475 |
T |
|
| Q |
302 |
ttctgaagaaagaaaaataagataaacattagtaagcgtaaaaaatgtttacacaattatatagcatattttatggatattctcatatattcctttgatt |
401 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44702474 |
ttctgaagaaagaaaaataagataaaccttggtaagtgtaaaaaatgtttacacaattatatagcatattttatggatattctcatatattcctttgatt |
44702375 |
T |
|
| Q |
402 |
tctagtatgaaggaaaaacatattgtaattaaagtctttatgcacttctttggcactagcatttgacccttgcaaat |
478 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44702374 |
tcaagtatgaaggaaaaacatattgtaattaaagtcgttatgcacttctttggcactagcatttgacccttgcaaat |
44702298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University