View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6503_low_5 (Length: 418)
Name: NF6503_low_5
Description: NF6503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6503_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 38218595 - 38218990
Alignment:
| Q |
1 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218595 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatg |
38218694 |
T |
|
| Q |
101 |
agtcggtccctgtgatgacaactgcaccatatatgcatatagcatcgttatttacttgcagcaccacaatacacaagaagcaaaacagaaacagaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218695 |
agtcggtccctgtgatgacaactgcaccatatat--------catcgttatttacttgcagcaccacaatacacaagaagcaaaacagaaacagaacaaa |
38218786 |
T |
|
| Q |
201 |
aatattctcata--aaagcttttgatatcgtgtagaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgctaaatgaggaagta |
298 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218787 |
aatattctcatataaaagcttttgatatcgtgttgaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgctaaatgaggaagta |
38218886 |
T |
|
| Q |
299 |
aagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaata |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38218887 |
aagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaata |
38218986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 38214376 - 38214769
Alignment:
| Q |
1 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214376 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatg |
38214475 |
T |
|
| Q |
101 |
agtcggtccctgtgatgacaactgcaccatatatgcatatagcatcgttatttacttgcagcaccacaatacacaagaagcaaaacagaaacagaacaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214476 |
agtcggtccctgtgatgacaactgcaccatatat--------catcgttatttacttgcagcaccacaatacacaagaagcaaaacagaaacagaacaaa |
38214567 |
T |
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| Q |
201 |
aatattctcataaaagcttttgatatcgtgtagaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgctaaatgaggaagtaaa |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214568 |
aatattctcataaaagcttttgatatcgtgttgaagctattttaattaaagttgctttcggaatagaaagaatatatgatatgctaaatgaggaagtaaa |
38214667 |
T |
|
| Q |
301 |
gaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaa |
400 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38214668 |
gaaaggaataaaaaatgaagtacatacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaa |
38214767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 42991153 - 42991023
Alignment:
| Q |
1 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||| || || |
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| T |
42991153 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggattaccgctaacatttcccaagaactcaaaatcaatttcgtcgtg |
42991054 |
T |
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| Q |
101 |
agtcggtccctgtgatgacaactgcaccata |
131 |
Q |
| |
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||| || || ||||||||||||||||||||| |
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| T |
42991053 |
agttggcccttgtgatgacaactgcaccata |
42991023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 42990854 - 42990776
Alignment:
| Q |
321 |
tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataa |
399 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
42990854 |
tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatcaattctaccgaataa |
42990776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 35016443 - 35016370
Alignment:
| Q |
325 |
tacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaata |
398 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||||| |
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| T |
35016443 |
tacgtagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaata |
35016370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35017820 - 35017692
Alignment:
| Q |
1 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatg |
100 |
Q |
| |
|
|||||||||| || ||||| ||||||| || | ||||||||| ||||| || || || ||||| ||||| ||||||||||||||||| |||||||| |
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| T |
35017820 |
gttgttctctattacctttaccttgagtgaagatgtttgtgtgaagaatataagggtcaccacttgtgtttcccaagaactcaaaatcaatctcatcatg |
35017721 |
T |
|
| Q |
101 |
agtcggtccctgtgatgacaactgcacca |
129 |
Q |
| |
|
|| ||||| || ||||||| ||| |||| |
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| T |
35017720 |
ggttggtccttgggatgacagctgtacca |
35017692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 53501955 - 53501885
Alignment:
| Q |
317 |
gaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaat |
387 |
Q |
| |
|
||||||| |||||| || ||||| ||||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
53501955 |
gaagtacttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat |
53501885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 53492500 - 53492447
Alignment:
| Q |
335 |
gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaatt |
388 |
Q |
| |
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||||| ||||| |||||||| || |||| ||||||||| ||||||||||||||| |
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|
| T |
53492500 |
gcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaatt |
53492447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 53499035 - 53498939
Alignment:
| Q |
1 |
gttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatc |
97 |
Q |
| |
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|||| |||||||| ||||||||||| |||||| || ||||| || ||||| ||||| ||||| | |||||| ||||| ||||| ||||| ||||| |
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| T |
53499035 |
gttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaatctcatc |
53498939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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