View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6504_low_1 (Length: 898)
Name: NF6504_low_1
Description: NF6504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6504_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 776; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 10 - 892
Target Start/End: Complemental strand, 27430907 - 27430027
Alignment:
| Q |
10 |
catcatcattgtcatcatatccactacatgtgatgaaaggactaggttgtaattatgccctctcatttttatttattttgttgtttcctctagttattat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430907 |
catcatcattgtcatcatatccactacatgtgatgaaaggactaggttgtaattatgccctctcatttttatttattttgttgtttcctctagttattat |
27430808 |
T |
|
| Q |
110 |
ggttttggctgacacagtaaaattatttgattgtttcatagtcctacttggttttgagnnnnnnnggtacaattagaaaacttatccaattatgtaatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27430807 |
ggttttggctgacacagtaaaattatttgattgtttcatagtcctacttggttttgagtttttttggtacaattagaaaacttatccaattatgtaatta |
27430708 |
T |
|
| Q |
210 |
tttttcagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcaca |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27430707 |
tttttcagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcaaaaaaagatcttgcaca |
27430608 |
T |
|
| Q |
310 |
ccgattttccaaggnnnnnnnnnnnnnttttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattattgattttcaaatta |
409 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27430607 |
ccgattttccaaggtatatatat----ttttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattattgattttcaaatta |
27430512 |
T |
|
| Q |
410 |
attaattttcactatgggaatatatatttatttatat--gctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaa |
507 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430511 |
attaattttcactatgggaatatatatttatttatatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaa |
27430412 |
T |
|
| Q |
508 |
caagtgcaacaaattcaagaggatccacctctttacaaaacaacctactatgcccatcatacttgtagaatcttgcaaagccctgagatcataatggatt |
607 |
Q |
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| T |
27430411 |
caagtgcaacaaattcaagaggatccacctctttacaaaacaacctactatgcccatcatacttgtagaatcttgcaaagctctgagatcataatggatt |
27430312 |
T |
|
| Q |
608 |
ctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaac |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430311 |
ctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaac |
27430212 |
T |
|
| Q |
708 |
atcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatcca |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430211 |
atcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatcca |
27430112 |
T |
|
| Q |
808 |
gaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
892 |
Q |
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| T |
27430111 |
gaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 718 - 892
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
718 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
817 |
Q |
| |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
|
| Q |
818 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
892 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 449 - 690
Target Start/End: Complemental strand, 27447717 - 27447476
Alignment:
| Q |
449 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
548 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
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| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
|
| Q |
549 |
aacctactatgcccatcatacttgtagaatcttgcaaagccctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaac |
648 |
Q |
| |
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|||||| | | |||||||||||||||||||||||||| ||||||||||||| | |||| |||| ||| || ||||||||||| ||||| ||||||||| |
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| T |
27447617 |
aacctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaac |
27447518 |
T |
|
| Q |
649 |
tctttcccaacaccagccaaacaagattgcccttttctctca |
690 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||| |
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| T |
27447517 |
tctttcccaacaccagccaaacaagactgtccttttctctca |
27447476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 27448668 - 27448560
Alignment:
| Q |
215 |
cagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcacaccgat |
314 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
27448668 |
cagaaaaatttcacaaacatgggagaaggagtctgaacagcctgaagaagatggtcatcagtggagaaagtatggccaaaaaaagatcttgcacaccgat |
27448569 |
T |
|
| Q |
315 |
tttccaagg |
323 |
Q |
| |
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||||||||| |
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|
| T |
27448568 |
tttccaagg |
27448560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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