View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6504_low_2 (Length: 376)
Name: NF6504_low_2
Description: NF6504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6504_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 47540513 - 47540162
Alignment:
| Q |
12 |
tatacttgggggccacatgtactgtcaattatnnnnnnntctggacattattgttgtgaacttgcaatgtacatacttctattgattatgagtttcaact |
111 |
Q |
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| T |
47540513 |
tatacttgggggccacatgtactgtcaattataaaaaaatctggacattattgttgtgaacttgcaatgtacatacttctattgattatgagtttcaact |
47540414 |
T |
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| Q |
112 |
gtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccacagctagtgcatcacatgtgtaacacca |
211 |
Q |
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| T |
47540413 |
gtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccacagctagtgcatcacatgtgtaacacca |
47540314 |
T |
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| Q |
212 |
caaatgaaaacaaatgtataagatggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttcttgttattgccacaatgcaaga |
311 |
Q |
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| T |
47540313 |
caaatgaaaacaaatgtataagatggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttcttgtcattgccacaatgtaaga |
47540214 |
T |
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| Q |
312 |
ttctcaactcgtatat---atagttgcagaggagcctttctaggaaaggaac |
360 |
Q |
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| T |
47540213 |
ttctcaactcgtatatataatagttgcagaggagcctttctaggaaaggaac |
47540162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 47546750 - 47546673
Alignment:
| Q |
108 |
aactgtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccaca |
185 |
Q |
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| T |
47546750 |
aactgtagcggctctgttaggatcatgcaagtcaacggtggtaccagtggggtccacacagaattcaacaaatccaca |
47546673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 47539147 - 47539063
Alignment:
| Q |
234 |
atggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttcttgttattgccacaatgcaagattctcaa |
318 |
Q |
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| T |
47539147 |
atggagaagtagttttagaccttctttctcctagctacttgaccctaaaaaagttctcgtttttgccacaatgtatgattctcaa |
47539063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 47546614 - 47546540
Alignment:
| Q |
217 |
gaaaacaaatgtataagatggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttctt |
291 |
Q |
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| T |
47546614 |
gaaaacaaatctataacaagaagaagtagttttggacgatcttcttcatggcttcttgaccctaaaaaagttctt |
47546540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 47541484 - 47541450
Alignment:
| Q |
326 |
atatagttgcagaggagcctttctaggaaaggaac |
360 |
Q |
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| T |
47541484 |
atatagttgcagaggagcctttctaggacaggaac |
47541450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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