View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6504_low_4 (Length: 252)

Name: NF6504_low_4
Description: NF6504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6504_low_4
NF6504_low_4
[»] chr4 (30 HSPs)
chr4 (25-241)||(54426156-54426372)
chr4 (25-66)||(26781-26822)
chr4 (25-66)||(38478825-38478866)
chr4 (25-64)||(35571549-35571588)
chr4 (25-63)||(29126182-29126220)
chr4 (25-66)||(18815136-18815177)
chr4 (25-66)||(25571372-25571413)
chr4 (25-66)||(46714907-46714948)
chr4 (173-238)||(54429788-54429853)
chr4 (25-61)||(1075571-1075607)
chr4 (26-66)||(23319965-23320005)
chr4 (25-65)||(55437189-55437229)
chr4 (28-63)||(20935943-20935978)
chr4 (25-64)||(27043748-27043787)
chr4 (25-63)||(24169376-24169414)
chr4 (25-63)||(24193645-24193683)
chr4 (24-66)||(55414329-55414371)
chr4 (25-66)||(17822781-17822822)
chr4 (25-66)||(21731572-21731613)
chr4 (32-61)||(22845627-22845656)
chr4 (25-62)||(23459740-23459777)
chr4 (25-62)||(32831438-32831475)
chr4 (25-66)||(39691065-39691106)
chr4 (25-66)||(42403939-42403980)
chr4 (25-66)||(44797993-44798034)
chr4 (25-66)||(45104312-45104353)
chr4 (34-66)||(19394865-19394897)
chr4 (25-61)||(19429391-19429427)
chr4 (24-64)||(21953385-21953425)
chr4 (29-57)||(42641564-42641592)
[»] chr6 (24 HSPs)
chr6 (25-63)||(4163266-4163304)
chr6 (25-63)||(4224887-4224925)
chr6 (26-64)||(9202903-9202941)
chr6 (28-66)||(35070570-35070608)
chr6 (25-66)||(35069528-35069569)
chr6 (25-64)||(835179-835218)
chr6 (25-64)||(10016736-10016775)
chr6 (25-64)||(31624373-31624412)
chr6 (25-64)||(33068520-33068559)
chr6 (32-66)||(507317-507351)
chr6 (25-63)||(4308890-4308928)
chr6 (25-63)||(20861617-20861655)
chr6 (25-63)||(33080497-33080535)
chr6 (31-65)||(34430833-34430867)
chr6 (33-66)||(2457062-2457095)
chr6 (34-63)||(10452340-10452369)
chr6 (25-66)||(12111080-12111121)
chr6 (28-65)||(29274141-29274178)
chr6 (25-66)||(30926632-30926673)
chr6 (25-66)||(32205929-32205970)
chr6 (34-66)||(848110-848142)
chr6 (35-63)||(6654706-6654734)
chr6 (25-65)||(27924520-27924560)
chr6 (31-63)||(31776191-31776223)
[»] chr3 (30 HSPs)
chr3 (28-66)||(47132432-47132470)
chr3 (24-66)||(1820048-1820090)
chr3 (25-63)||(20880589-20880627)
chr3 (25-66)||(20170630-20170671)
chr3 (25-62)||(24085258-24085295)
chr3 (25-66)||(44014714-44014755)
chr3 (33-64)||(32663759-32663790)
chr3 (25-64)||(39980842-39980881)
chr3 (25-63)||(1288768-1288806)
chr3 (25-63)||(3775770-3775808)
chr3 (25-63)||(24684741-24684779)
chr3 (25-59)||(31365111-31365145)
chr3 (25-62)||(584159-584196)
chr3 (25-66)||(22667516-22667557)
chr3 (25-66)||(22724155-22724196)
chr3 (26-63)||(26990144-26990181)
chr3 (29-66)||(27896094-27896131)
chr3 (31-64)||(36507010-36507043)
chr3 (26-66)||(42799882-42799923)
chr3 (25-66)||(46886608-46886649)
chr3 (25-66)||(51929854-51929895)
chr3 (25-66)||(53762310-53762351)
chr3 (25-65)||(16072958-16072998)
chr3 (25-61)||(18405752-18405788)
chr3 (25-61)||(24158437-24158473)
chr3 (25-57)||(27795938-27795970)
chr3 (25-65)||(38902178-38902218)
chr3 (25-65)||(41164907-41164947)
chr3 (24-64)||(48597522-48597561)
chr3 (31-63)||(49092887-49092919)
[»] chr8 (21 HSPs)
chr8 (25-66)||(30251370-30251411)
chr8 (25-64)||(36963272-36963311)
chr8 (25-63)||(9130238-9130276)
chr8 (24-66)||(35643904-35643946)
chr8 (25-63)||(44792769-44792807)
chr8 (25-66)||(16162873-16162914)
chr8 (25-66)||(38602440-38602481)
chr8 (25-66)||(43045641-43045682)
chr8 (32-64)||(10062059-10062091)
chr8 (25-65)||(15180652-15180692)
chr8 (31-61)||(11183662-11183692)
chr8 (25-66)||(3536861-3536902)
chr8 (25-66)||(6526168-6526209)
chr8 (25-66)||(7008711-7008752)
chr8 (25-66)||(9700114-9700155)
chr8 (25-66)||(13958002-13958043)
chr8 (25-66)||(29699384-29699425)
chr8 (25-66)||(43043781-43043822)
chr8 (25-66)||(43717850-43717891)
chr8 (25-66)||(44236739-44236780)
chr8 (24-64)||(43730866-43730906)
[»] chr2 (36 HSPs)
chr2 (25-66)||(15370239-15370280)
chr2 (25-64)||(33942019-33942058)
chr2 (25-68)||(45229624-45229667)
chr2 (25-63)||(40837356-40837394)
chr2 (33-66)||(4607046-4607079)
chr2 (25-66)||(7928214-7928255)
chr2 (25-66)||(15305787-15305828)
chr2 (25-66)||(29936141-29936182)
chr2 (25-66)||(33503111-33503152)
chr2 (31-63)||(3312196-3312228)
chr2 (25-65)||(26143559-26143599)
chr2 (32-64)||(30990357-30990389)
chr2 (25-61)||(33319737-33319773)
chr2 (25-65)||(42659128-42659168)
chr2 (26-66)||(42868397-42868437)
chr2 (31-66)||(37434449-37434484)
chr2 (32-66)||(2790358-2790392)
chr2 (25-63)||(4350803-4350841)
chr2 (25-63)||(43259948-43259986)
chr2 (31-60)||(2196041-2196070)
chr2 (26-63)||(6772452-6772489)
chr2 (26-67)||(27237781-27237822)
chr2 (33-66)||(27317500-27317533)
chr2 (25-66)||(28803446-28803487)
chr2 (25-66)||(28810368-28810409)
chr2 (33-66)||(31744419-31744452)
chr2 (25-66)||(39659425-39659466)
chr2 (25-66)||(39983458-39983499)
chr2 (25-66)||(40400816-40400857)
chr2 (25-66)||(40759273-40759314)
chr2 (32-65)||(41170730-41170763)
chr2 (32-64)||(18179069-18179101)
chr2 (25-65)||(38767499-38767539)
chr2 (25-61)||(40158831-40158867)
chr2 (34-66)||(41407424-41407456)
chr2 (35-63)||(41812011-41812039)
[»] chr1 (26 HSPs)
chr1 (25-66)||(2295209-2295250)
chr1 (25-66)||(14385709-14385750)
chr1 (29-66)||(14576570-14576607)
chr1 (25-61)||(22416832-22416868)
chr1 (25-68)||(473276-473319)
chr1 (31-66)||(2295310-2295345)
chr1 (25-63)||(21002268-21002306)
chr1 (25-63)||(41505787-41505825)
chr1 (25-66)||(15477666-15477707)
chr1 (25-66)||(37473520-37473561)
chr1 (25-66)||(38247440-38247481)
chr1 (25-66)||(43230688-43230729)
chr1 (25-61)||(4549462-4549498)
chr1 (25-61)||(18327067-18327103)
chr1 (25-64)||(34952315-34952354)
chr1 (25-63)||(6292605-6292643)
chr1 (32-66)||(15942663-15942697)
chr1 (25-63)||(35017695-35017733)
chr1 (25-66)||(37631475-37631516)
chr1 (25-62)||(42575389-42575426)
chr1 (25-57)||(1662686-1662718)
chr1 (25-61)||(5721038-5721074)
chr1 (25-61)||(5741719-5741755)
chr1 (25-57)||(15515669-15515701)
chr1 (25-57)||(28837278-28837310)
chr1 (25-65)||(30815571-30815611)
[»] chr5 (36 HSPs)
chr5 (25-61)||(10771809-10771845)
chr5 (25-65)||(16937800-16937840)
chr5 (25-62)||(37954800-37954837)
chr5 (25-66)||(42100424-42100465)
chr5 (31-64)||(42647009-42647042)
chr5 (26-66)||(12433089-12433129)
chr5 (25-64)||(11153364-11153403)
chr5 (25-64)||(14331479-14331518)
chr5 (31-62)||(20982132-20982163)
chr5 (25-60)||(22209746-22209781)
chr5 (24-66)||(10391454-10391496)
chr5 (25-63)||(11700275-11700313)
chr5 (28-66)||(11707159-11707197)
chr5 (25-63)||(36318887-36318925)
chr5 (25-63)||(40848854-40848892)
chr5 (25-63)||(43300991-43301029)
chr5 (25-66)||(6938649-6938690)
chr5 (25-66)||(7705914-7705955)
chr5 (25-66)||(10640066-10640107)
chr5 (32-61)||(11615575-11615604)
chr5 (25-66)||(15246946-15246987)
chr5 (25-66)||(17368785-17368826)
chr5 (24-65)||(17369315-17369356)
chr5 (25-74)||(25720325-25720374)
chr5 (25-66)||(40438870-40438911)
chr5 (25-66)||(41535020-41535061)
chr5 (25-66)||(42034173-42034214)
chr5 (32-64)||(1773024-1773056)
chr5 (33-61)||(7674768-7674796)
chr5 (31-63)||(14932415-14932447)
chr5 (25-61)||(14980622-14980658)
chr5 (34-62)||(25461568-25461596)
chr5 (25-65)||(26004914-26004954)
chr5 (25-57)||(34117473-34117505)
chr5 (34-66)||(35299887-35299919)
chr5 (30-70)||(36797007-36797047)
[»] scaffold0020 (1 HSPs)
scaffold0020 (32-66)||(159889-159923)
[»] chr7 (17 HSPs)
chr7 (25-63)||(1418532-1418570)
chr7 (25-63)||(11619077-11619115)
chr7 (29-66)||(3610656-3610693)
chr7 (25-66)||(5947354-5947395)
chr7 (25-66)||(40252039-40252080)
chr7 (25-69)||(46082149-46082193)
chr7 (25-60)||(425745-425780)
chr7 (25-60)||(529475-529510)
chr7 (25-60)||(32410653-32410688)
chr7 (25-62)||(7513672-7513709)
chr7 (25-66)||(17944259-17944300)
chr7 (24-69)||(40687460-40687505)
chr7 (29-61)||(3836604-3836636)
chr7 (25-65)||(19302480-19302520)
chr7 (32-64)||(29363628-29363660)
chr7 (27-63)||(40598404-40598440)
chr7 (34-66)||(48470166-48470198)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 54426156 - 54426372
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggcataatactgaaacatttagcatgtaagtagtgatgtacatcatctgatgcttcacgtt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54426156 ttatgccagtagataagctcaaataagccaatccaaacaggcataatactgaaacatttagcatgtaagtagtgatgtacatcatctgatgcttcacgtt 54426255  T
Q  125 gctttgttttgtttcttcgactttgggttggtttgaacttaaataattcaactgcatttcagatgtccaaatcttgaggtgttgtcaatcagaagctgcc 224  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54426256 gctttgttttgttttttcgactttgggttggtttgaacttaaataattcaactgcatttcagatgtccaaatcttgaggtgttgtcaatcagaagctgcc 54426355  T
Q  225 ctcgtgttactgatgat 241  Q
    |||||||||||||||||    
T  54426356 ctcgtgttactgatgat 54426372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 26822 - 26781
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  26822 ttatgccagttgataagctcaaataagccaatccaaacaggc 26781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 38478825 - 38478866
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  38478825 ttatgccagtagatatgctcaaataagccaatccaaacaggc 38478866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 35571588 - 35571549
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  35571588 ttatgctagtagataagctcaaataagccaatccaaacag 35571549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 29126220 - 29126182
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29126220 ttatgccggtagataagctcaaataagccaatccaaaca 29126182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18815136 - 18815177
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  18815136 ttatgctagtaggtaagctcaaataagccaatccaaacaggc 18815177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 25571372 - 25571413
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  25571372 ttatgtcagtagataaactcaaataagccaatccaaacaggc 25571413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 46714948 - 46714907
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  46714948 ttatgccagtagataagttcaaataagccaattcaaacaggc 46714907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 54429853 - 54429788
Alignment:
Q  173 caactgcatttcagatgtccaaatcttgaggtgttgtcaatcagaagctgccctcgtgttactgat 238  Q
    |||||| ||||||||||| ||||||||||| | |||||||||||||||| || |||  ||||||||    
T  54429853 caactgtatttcagatgttcaaatcttgagatattgtcaatcagaagctcccttcgcattactgat 54429788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 1075571 - 1075607
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1075571 ttatgccagtagataagctcaaataagccaattcaaa 1075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 23319965 - 23320005
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  23319965 tatgctagtagataatctcaaataagccaatccaaacaggc 23320005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 55437189 - 55437229
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  55437189 ttatggcagtagataaactcaaataagccaatccaaacagg 55437229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 20935978 - 20935943
Alignment:
Q  28 tgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||||||||||||||| ||||||||||||    
T  20935978 tgccagtagataagctcaaataaaccaatccaaaca 20935943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 27043787 - 27043748
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  27043787 ttatgtcagtagataagctcaaataagtcaatccaaacag 27043748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 24169376 - 24169414
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  24169376 ttatgccagtagataaactctaataagccaatccaaaca 24169414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 24193645 - 24193683
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  24193645 ttatgccaggagataagctcaaataagtcaatccaaaca 24193683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 55414371 - 55414329
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  55414371 attatgccagtagatactctcaaataagtcaatccaaacaggc 55414329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 17822822 - 17822781
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  17822822 ttatgtcagtagataagctcaaataagttaatccaaacaggc 17822781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 21731613 - 21731572
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||| |||||||||| |||||||||||||||    
T  21731613 ttatgtcagtagatatgctcaaataaaccaatccaaacaggc 21731572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 22845656 - 22845627
Alignment:
Q  32 agtagataagctcaaataagccaatccaaa 61  Q
    ||||||||||||||||||||||||||||||    
T  22845656 agtagataagctcaaataagccaatccaaa 22845627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 23459740 - 23459777
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  23459740 ttatgctagtagataagctcaaatatgccaatccaaac 23459777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 32831475 - 32831438
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  32831475 ttatgtcagtagataagctcaaatgagccaatccaaac 32831438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 39691106 - 39691065
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| |||||||||||||||||||| |||| |||||||||    
T  39691106 ttatgctagtagataagctcaaataagtcaattcaaacaggc 39691065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 42403980 - 42403939
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||| |||||||||||||||| ||||||||||||||    
T  42403980 ttatgtcagttgataagctcaaataagtcaatccaaacaggc 42403939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 44797993 - 44798034
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||||||| |||| |||||||||||||||||    
T  44797993 ttatgtcagtagataagcttaaatcagccaatccaaacaggc 44798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 45104353 - 45104312
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| |||||| |||||||||||| |||||||||||||    
T  45104353 ttatgccaatagatatgctcaaataagctaatccaaacaggc 45104312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 19394897 - 19394865
Alignment:
Q  34 tagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||||||||||||| ||||    
T  19394897 tagataagctcaaataagccaatccaaataggc 19394865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 19429427 - 19429391
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||| |||||| |||||||||||||||||||||||||    
T  19429427 ttataccagtaaataagctcaaataagccaatccaaa 19429391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 21953385 - 21953425
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  21953385 attatgctactagataagctcaaataagtcaatccaaacag 21953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 42641592 - 42641564
Alignment:
Q  29 gccagtagataagctcaaataagccaatc 57  Q
    |||||||||||||||||||||||||||||    
T  42641592 gccagtagataagctcaaataagccaatc 42641564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 4163266 - 4163304
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4163266 ttatgccagtagataagctcaaataagccaatccaaaca 4163304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 4224887 - 4224925
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4224887 ttatgccagtagataagctcaaataagccaatccaaaca 4224925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 9202941 - 9202903
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  9202941 tatgccagtagataagctcaaataagtcaatccaaacag 9202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 35070608 - 35070570
Alignment:
Q  28 tgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  35070608 tgccagtaggtaagctcaaataagccaatccaaacaggc 35070570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 35069569 - 35069528
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  35069569 ttatgtcagtagataagctcaaataagccaatacaaacaggc 35069528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 835218 - 835179
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  835218 ttatgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 10016736 - 10016775
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  10016736 ttatgcctgtagataagctcaaataaaccaatccaaacag 10016775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 31624373 - 31624412
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  31624373 ttatgtcagtatataagctcaaataagccaatccaaacag 31624412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 33068559 - 33068520
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  33068559 ttatgtcagtagataagttcaaataagccaatccaaacag 33068520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 507317 - 507351
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||| ||||||||||||||||||    
T  507317 agtagataagctcaaacaagccaatccaaacaggc 507351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 4308890 - 4308928
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  4308890 ttatgtcagtagataaactcaaataagccaatccaaaca 4308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 20861655 - 20861617
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  20861655 ttatgccagtaggtaagctcaaataagacaatccaaaca 20861617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33080535 - 33080497
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  33080535 ttatgccagtaaataagctcaaataagcctatccaaaca 33080497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 34430833 - 34430867
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaacagg 65  Q
    |||| ||||||||||||||||||||||||||||||    
T  34430833 cagttgataagctcaaataagccaatccaaacagg 34430867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 2457062 - 2457095
Alignment:
Q  33 gtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| |||||||||||||||||||||||||    
T  2457062 gtagataatctcaaataagccaatccaaacaggc 2457095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 10452369 - 10452340
Alignment:
Q  34 tagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||||||||||||||||||||||    
T  10452369 tagataagctcaaataagccaatccaaaca 10452340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 12111080 - 12111121
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| |||||||||||||||||||| ||||||||| ||||    
T  12111080 ttatgctagtagataagctcaaataagtcaatccaaataggc 12111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 29274178 - 29274141
Alignment:
Q  28 tgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||||||||||||||| || |||||||||||||||||    
T  29274178 tgccagtagataagctccaacaagccaatccaaacagg 29274141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 30926632 - 30926673
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  30926632 ttatgccagaaaataagctcaaataagccaaaccaaacaggc 30926673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 32205970 - 32205929
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| |||||||||| ||||||||| ||||||||||||||    
T  32205970 ttatgctagtagataaggtcaaataagtcaatccaaacaggc 32205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 848110 - 848142
Alignment:
Q  34 tagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||| ||||||||||||||    
T  848110 tagataagctcaaataaggcaatccaaacaggc 848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 6654706 - 6654734
Alignment:
Q  35 agataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||||    
T  6654706 agataagctcaaataagccaatccaaaca 6654734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27924560 - 27924520
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    |||||||||||| ||||||||||| ||| ||||||||||||    
T  27924560 ttatgccagtaggtaagctcaaatgagctaatccaaacagg 27924520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 31776223 - 31776191
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||||||||||||| |||||||||||    
T  31776223 cagtagataagctcaaataagtcaatccaaaca 31776191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 47132432 - 47132470
Alignment:
Q  28 tgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47132432 tgccagtagataagctcaaataagccaatccaaacaggc 47132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 1820090 - 1820048
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  1820090 attatgccataagataagctcaaataagccaatccaaacaggc 1820048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 20880589 - 20880627
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  20880589 ttatgcaagtagataagctcaaataagccaatccaaaca 20880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 20170671 - 20170630
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  20170671 ttatgtcactagataagctcaaataagccaatccaaacaggc 20170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 24085295 - 24085258
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  24085295 ttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 44014755 - 44014714
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  44014755 ttatgctagtagataaactcaaataagccaatccaaacaggc 44014714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 32663759 - 32663790
Alignment:
Q  33 gtagataagctcaaataagccaatccaaacag 64  Q
    ||||||||||||||||||||||||||||||||    
T  32663759 gtagataagctcaaataagccaatccaaacag 32663790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 39980842 - 39980881
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  39980842 ttatgctagtagataagctcaaacaagccaatccaaacag 39980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 1288806 - 1288768
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  1288806 ttatgccagttgataagctcaaataagtcaatccaaaca 1288768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 3775808 - 3775770
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  3775808 ttatgccagtagataaactcaaataaggcaatccaaaca 3775770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 24684779 - 24684741
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  24684779 ttatgccagtagataagctcaaataagttaatccaaaca 24684741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 31365145 - 31365111
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatcca 59  Q
    |||||||| ||||||||||||||||||||||||||    
T  31365145 ttatgccaatagataagctcaaataagccaatcca 31365111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 584159 - 584196
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  584159 ttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 22667516 - 22667557
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||    
T  22667516 ttatgtcagtagataagctcaaataagccaatcgaaataggc 22667557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 22724155 - 22724196
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||    
T  22724155 ttatgtcagtagataagctcaaataagccaatcgaaataggc 22724196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 26990181 - 26990144
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaaca 26990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 27896131 - 27896094
Alignment:
Q  29 gccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  27896131 gccaatagataagttcaaataagccaatccaaacaggc 27896094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 36507043 - 36507010
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||| |||||||||||||||||||||||    
T  36507043 cagtagataaactcaaataagccaatccaaacag 36507010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 42799923 - 42799882
Alignment:
Q  26 tatgccagtagataa-gctcaaataagccaatccaaacaggc 66  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  42799923 tatgtcagtagataaagctcaaataagccaatccaaacaggc 42799882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 46886649 - 46886608
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  46886649 ttatgccagcagataagctcaaataaaccaatccaagcaggc 46886608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 51929854 - 51929895
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| | |||||||||||||||||| ||||||||||||||    
T  51929854 ttatgctaatagataagctcaaataagtcaatccaaacaggc 51929895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 53762351 - 53762310
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||||||||||||| ||||||||| |||||    
T  53762351 ttatgctagtagataagctcaaataaaccaatccaagcaggc 53762310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 16072998 - 16072958
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  16072998 ttatgtcattagataagctcaaataagtcaatccaaacagg 16072958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 18405788 - 18405752
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  18405788 ttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 24158473 - 24158437
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  24158473 ttatgtcagtagataagcttaaataagccaatccaaa 24158437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 27795970 - 27795938
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatc 57  Q
    |||||||||||||||||||||||||||| ||||    
T  27795970 ttatgccagtagataagctcaaataagctaatc 27795938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 38902178 - 38902218
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    |||||||||||||||||||||||| || |||| ||||||||    
T  38902178 ttatgccagtagataagctcaaatgaggcaattcaaacagg 38902218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 41164947 - 41164907
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||||| ||||||||| |||||||||| ||||||||||||    
T  41164947 ttatgccggtagataagttcaaataagctaatccaaacagg 41164907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 48597561 - 48597522
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  48597561 attatgccagtagataaactcaa-taagccaatccaaacag 48597522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 49092887 - 49092919
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||| ||||||||    
T  49092887 cagtagataagctcaaataagccagtccaaaca 49092919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 30251411 - 30251370
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  30251411 ttatgtcagtagataagctcaaataagccaatccaaacaggc 30251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 36963311 - 36963272
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  36963311 ttatgccagtagattagctcaaataagccaatccaaacag 36963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 9130276 - 9130238
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  9130276 ttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 35643946 - 35643904
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  35643946 attatgccagtagataagcccaaataagccaatcccaacaggc 35643904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 44792769 - 44792807
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44792769 ttatcccagtagataagctcaaataagccaatccaaaca 44792807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 16162873 - 16162914
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  16162873 ttatgctagtagataaactcaaataagccaatccaaacaggc 16162914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 38602440 - 38602481
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  38602440 ttatgtcagtagataagctcaaataagtcaatccaaacaggc 38602481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 43045682 - 43045641
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  43045682 ttatgctagtagataagcttaaataagccaatccaaacaggc 43045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 10062091 - 10062059
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||||||||||||||||||||||||    
T  10062091 agtagataagctcaaataagccaatccaaacag 10062059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 15180652 - 15180692
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  15180652 ttatggcagtagataaactcaaataagccaatccaaacagg 15180692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 11183662 - 11183692
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaa 61  Q
    |||||||||||||||||||||||||||||||    
T  11183662 cagtagataagctcaaataagccaatccaaa 11183692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 3536902 - 3536861
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  3536902 ttatgccagtagataagctcaaataagacaatctaaataggc 3536861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6526209 - 6526168
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||| |||| |||||| ||||||||||||||    
T  6526209 ttatgccagtagataggctcgaataagtcaatccaaacaggc 6526168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 7008711 - 7008752
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||| |||||||||| |||| |||||||||    
T  7008711 ttatgccagtagataaactcaaataagtcaattcaaacaggc 7008752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 9700114 - 9700155
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  9700114 ttatgctagtagataagctcaaataagttaatccaaacaggc 9700155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 13958043 - 13958002
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  13958043 ttatgccaatagataaactcaagtaagccaatccaaacaggc 13958002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29699384 - 29699425
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  29699384 ttatgccagcagagaagctcaaataagtcaatccaaacaggc 29699425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 43043781 - 43043822
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  43043781 ttatgccagttgataagctcaaacaagtcaatccaaacaggc 43043822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 43717891 - 43717850
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| || |||||||||||||||||||||||||||| ||||    
T  43717891 ttatgtcaatagataagctcaaataagccaatccaaataggc 43717850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 44236780 - 44236739
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||| ||||||||||  |||||||||||||    
T  44236780 ttatgccagtagataaactcaaataaggtaatccaaacaggc 44236739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 43730866 - 43730906
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||||||||||||||||||| |||||| ||| ||||||||    
T  43730866 attatgccagtagataagctcgaataagtcaaaccaaacag 43730906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 15370280 - 15370239
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  15370280 ttatgccagtagataagctcaaataagtcaatccaaacaggc 15370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 33942019 - 33942058
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  33942019 ttatgccagtagataacctcaaataagccaatccaaacag 33942058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 45229624 - 45229667
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggcat 68  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  45229624 ttatgccagtagataagctcaaatcaaccaatccaaacaggcat 45229667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 40837394 - 40837356
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  40837394 ttatgtcagtagataagctcaaataagccaatccaaaca 40837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 4607046 - 4607079
Alignment:
Q  33 gtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||||||||||||||||||    
T  4607046 gtagataagctcaaataagccaatccaaacaggc 4607079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7928255 - 7928214
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  7928255 ttatgtcaatagataagctcaaataagccaatccaaacaggc 7928214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 15305787 - 15305828
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  15305787 ttatgtcaatagataagctcaaataagccaatccaaacaggc 15305828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29936141 - 29936182
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  29936141 ttatgccagaagatgagctcaaataagccaatccaaacaggc 29936182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 33503111 - 33503152
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  33503111 ttatgctagtagataagctcaaataagccaatacaaacaggc 33503152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 3312196 - 3312228
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||||||||    
T  3312196 cagtagataagctcaaataagccaatccaaaca 3312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 26143599 - 26143559
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  26143599 ttatgtcagtagataagctcaaacaagccaatccaaacagg 26143559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 30990389 - 30990357
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||||||||||||||||||||||||    
T  30990389 agtagataagctcaaataagccaatccaaacag 30990357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 33319773 - 33319737
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33319773 ttatgccagtagacaagctcaaataagccaatccaaa 33319737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 42659168 - 42659128
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  42659168 ttatgccagtaaataagctcaaataagccaacccaaacagg 42659128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 42868437 - 42868397
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  42868437 tatgccaatagataagctcaaataaggcaatccaaacaggc 42868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 37434484 - 37434449
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||| ||||||||||||||||||||||    
T  37434484 cagtagataagcttaaataagccaatccaaacaggc 37434449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 2790358 - 2790392
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||| ||||||||||||||||||||||||    
T  2790358 agtagataagttcaaataagccaatccaaacaggc 2790392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 4350803 - 4350841
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  4350803 ttatgtcagtagagaagctcaaataagccaatccaaaca 4350841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 43259948 - 43259986
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  43259948 ttatgctagtagataagttcaaataagccaatccaaaca 43259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 2196041 - 2196070
Alignment:
Q  31 cagtagataagctcaaataagccaatccaa 60  Q
    ||||||||||||||||||||||||||||||    
T  2196041 cagtagataagctcaaataagccaatccaa 2196070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 6772489 - 6772452
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  6772489 tatgcctgtagataagctcaaataagtcaatccaaaca 6772452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 27237822 - 27237781
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaacaggca 67  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  27237822 tatgtcagtagataagcacaaataagccaatccgaacaggca 27237781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 27317500 - 27317533
Alignment:
Q  33 gtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||| ||||||||||||||    
T  27317500 gtagataagctcaaataagtcaatccaaacaggc 27317533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 28803487 - 28803446
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  28803487 ttatgccggtagataagctcaaataagtcaatccaaataggc 28803446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 28810409 - 28810368
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| |||| ||||||||||||| ||||||||||||||    
T  28810409 ttatgccaatagagaagctcaaataagtcaatccaaacaggc 28810368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 31744419 - 31744452
Alignment:
Q  33 gtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||| |||||||||||||||||||||||    
T  31744419 gtagataagcccaaataagccaatccaaacaggc 31744452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 39659466 - 39659425
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||||||||||  ||||||||||||||||||    
T  39659466 ttatgtcagtagataagctcaagcaagccaatccaaacaggc 39659425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 39983458 - 39983499
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||| |||||||| ||||||||||| |||||||||||||    
T  39983458 ttatgccggtagataacctcaaataagcaaatccaaacaggc 39983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40400857 - 40400816
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  40400857 ttatgtcagtagataggcttaaataagccaatccaaacaggc 40400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40759273 - 40759314
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| || |||||||||||||||||| ||||||||||||||    
T  40759273 ttatgtcaatagataagctcaaataaggcaatccaaacaggc 40759314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 41170730 - 41170763
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacagg 65  Q
    ||||||||| ||||||||||||||||||||||||    
T  41170730 agtagataaactcaaataagccaatccaaacagg 41170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 18179069 - 18179101
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||||||||||| ||||||||||||    
T  18179069 agtagataagctcaaataagtcaatccaaacag 18179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 38767539 - 38767499
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||||||||||||||||||  ||||||||||| |||||||    
T  38767539 ttatgccagtagataagctcgtataagccaatctaaacagg 38767499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 40158831 - 40158867
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  40158831 ttatgtcagtagatatgctcaaataagccaatccaaa 40158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 41407424 - 41407456
Alignment:
Q  34 tagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||| |||||||||||||||||||    
T  41407424 tagataagctcaagtaagccaatccaaacaggc 41407456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 41812039 - 41812011
Alignment:
Q  35 agataagctcaaataagccaatccaaaca 63  Q
    |||||||||||||||||||||||||||||    
T  41812039 agataagctcaaataagccaatccaaaca 41812011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 2295209 - 2295250
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  2295209 ttatgccagtagataagctcaaataagccaattcaaacaggc 2295250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 14385750 - 14385709
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  14385750 ttatgccagtagataagctcaaataagccaatccgaacaggc 14385709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 14576607 - 14576570
Alignment:
Q  29 gccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14576607 gccagtagataagctcaaataagccaatccaaacaggc 14576570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 22416868 - 22416832
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  22416868 ttatgccagtagataagctcaaataagccaatccaaa 22416832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 473276 - 473319
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggcat 68  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  473276 ttatgccagtagataggctcaaataagccaatctaaacaggcat 473319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 2295310 - 2295345
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  2295310 cagtagataagctcaaataagccaatccaaacaggc 2295345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 21002268 - 21002306
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  21002268 ttatgcaagtagataagctcaaataagccaatccaaaca 21002306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 41505787 - 41505825
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  41505787 ttatgtcagtagataagctcaaataagccaatccaaaca 41505825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 15477666 - 15477707
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||||||| |||||||||||||||||||||    
T  15477666 ttatgcaagtagataagctctaataagccaatccaaacaggc 15477707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 37473520 - 37473561
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  37473520 ttatgcccgtagataatctcaaataagccaatccaaacaggc 37473561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 38247440 - 38247481
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  38247440 ttatgccagtagataagttcaaataacccaatccaaacaggc 38247481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 43230729 - 43230688
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  43230729 ttatgccagtagagaagctcaaatatgccaatccaaacaggc 43230688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4549498 - 4549462
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4549498 ttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 18327103 - 18327067
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18327103 ttatgacagtagataagctcaaataagccaatccaaa 18327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 34952315 - 34952354
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  34952315 ttatcccaatagataagctcaaataagccaatccaaacag 34952354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 6292605 - 6292643
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  6292605 ttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 15942697 - 15942663
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| ||||||||||||||||||||||||||    
T  15942697 agtagataggctcaaataagccaatccaaacaggc 15942663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 35017695 - 35017733
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  35017695 ttatgccaatagataagctcaaataagccaatctaaaca 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 37631516 - 37631475
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| | ||||| |||||||||||||||||||||||||||    
T  37631516 ttatgctaatagatgagctcaaataagccaatccaaacaggc 37631475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 42575426 - 42575389
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  42575426 ttatgctagtagataagctcaaataaggcaatccaaac 42575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 1662686 - 1662718
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatc 57  Q
    |||||| ||||||||||||||||||||||||||    
T  1662686 ttatgctagtagataagctcaaataagccaatc 1662718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 5721038 - 5721074
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  5721038 ttatgcaagtagttaagctcaaataagccaatccaaa 5721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 5741719 - 5741755
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  5741719 ttatgcaagtagttaagctcaaataagccaatccaaa 5741755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 15515669 - 15515701
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatc 57  Q
    ||||||||||||||||||||||||||| |||||    
T  15515669 ttatgccagtagataagctcaaataagtcaatc 15515701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 28837310 - 28837278
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatc 57  Q
    ||||| |||||||||||||||||||||||||||    
T  28837310 ttatgtcagtagataagctcaaataagccaatc 28837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 30815611 - 30815571
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    |||||| ||||||||| ||||||||||||| ||||||||||    
T  30815611 ttatgctagtagataacctcaaataagccattccaaacagg 30815571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 10771845 - 10771809
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  10771845 ttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 16937840 - 16937800
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  16937840 ttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 37954800 - 37954837
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  37954800 ttatgcctgtagataagctcaaataagccaatccaaac 37954837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 42100424 - 42100465
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  42100424 ttatgccaatagataagctcaaataagcccatccaaacaggc 42100465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 42647009 - 42647042
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaacag 64  Q
    ||||||||||||||||||||||||||||||||||    
T  42647009 cagtagataagctcaaataagccaatccaaacag 42647042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 12433129 - 12433089
Alignment:
Q  26 tatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  12433129 tatgccagtaaataagttcaaataagccaatccaaacaggc 12433089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 11153403 - 11153364
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  11153403 ttatgctagtagataagctcaaacaagccaatccaaacag 11153364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 14331479 - 14331518
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacag 64  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14331479 ttatgacagtagataagctcaaataagtcaatccaaacag 14331518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 20982163 - 20982132
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaac 62  Q
    ||||||||||||||||||||||||||||||||    
T  20982163 cagtagataagctcaaataagccaatccaaac 20982132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 22209781 - 22209746
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaa 60  Q
    ||||||||||||||||||||||||||| ||||||||    
T  22209781 ttatgccagtagataagctcaaataagtcaatccaa 22209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 10391454 - 10391496
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||    
T  10391454 attatgccagcagataagcttaaataagccaatcgaaacaggc 10391496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 11700275 - 11700313
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  11700275 ttatgccagtggataagctcaaataagcaaatccaaaca 11700313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 11707159 - 11707197
Alignment:
Q  28 tgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  11707159 tgccagtaaataagctcaaataagtcaatccaaacaggc 11707197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 36318887 - 36318925
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  36318887 ttatgccagtagataagctaaaataagacaatccaaaca 36318925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 40848854 - 40848892
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  40848854 ttatgccagtggataagttcaaataagccaatccaaaca 40848892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 43300991 - 43301029
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||||||| || |||||||||||||||||||||||||||    
T  43300991 ttatgccattatataagctcaaataagccaatccaaaca 43301029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6938690 - 6938649
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||||||||||||| | |||||||||||||    
T  6938690 ttatgctagtagataagctcaaataacctaatccaaacaggc 6938649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7705955 - 7705914
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| |||||||| ||||||||||| ||||||||||||||    
T  7705955 ttatgctagtagatatgctcaaataagtcaatccaaacaggc 7705914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 10640066 - 10640107
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||||||| ||||||||||| |||||||||||||    
T  10640066 ttatgtcagtagataaactcaaataagctaatccaaacaggc 10640107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 11615604 - 11615575
Alignment:
Q  32 agtagataagctcaaataagccaatccaaa 61  Q
    ||||||||||||||||||||||||||||||    
T  11615604 agtagataagctcaaataagccaatccaaa 11615575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 15246946 - 15246987
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||||||||||||||||| | |||||||||||||    
T  15246946 ttatgtcagtagataagctcaaataaacaaatccaaacaggc 15246987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 17368785 - 17368826
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||| | ||||||| ||||||||||||||    
T  17368785 ttatgccagtagataagtttaaataagtcaatccaaacaggc 17368826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 17369315 - 17369356
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    |||||| ||||||||||| ||||||||| |||||||||||||    
T  17369315 attatgtcagtagataagttcaaataagtcaatccaaacagg 17369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 25720374 - 25720325
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggcataatact 74  Q
    |||||||||||||||| ||||||||||| ||| |||||||| ||| ||||    
T  25720374 ttatgccagtagataacctcaaataagctaattcaaacaggtatagtact 25720325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40438911 - 40438870
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||| ||| |||||||||||||||||| ||||    
T  40438911 ttatgccagtagatgagcccaaataagccaatccaaagaggc 40438870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 41535061 - 41535020
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||||| ||||||||||||||||| |||||||||    
T  41535061 ttatggcagtagatgagctcaaataagccaattcaaacaggc 41535020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 42034173 - 42034214
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||| |||||| ||||||||||||||| |||||||||||||    
T  42034173 ttatgtcagtaggtaagctcaaataagctaatccaaacaggc 42034214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 1773056 - 1773024
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||||| ||||||||||||||||||||    
T  1773056 agtagataagctaaaataagccaatccaaacag 1773024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 7674768 - 7674796
Alignment:
Q  33 gtagataagctcaaataagccaatccaaa 61  Q
    |||||||||||||||||||||||||||||    
T  7674768 gtagataagctcaaataagccaatccaaa 7674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 14932415 - 14932447
Alignment:
Q  31 cagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||||||||||||| |||||||||||    
T  14932415 cagtagataagctcaaataagtcaatccaaaca 14932447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 14980622 - 14980658
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaa 61  Q
    ||||||||||||||||||||||||||| || ||||||    
T  14980622 ttatgccagtagataagctcaaataagtcattccaaa 14980658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 25461596 - 25461568
Alignment:
Q  34 tagataagctcaaataagccaatccaaac 62  Q
    |||||||||||||||||||||||||||||    
T  25461596 tagataagctcaaataagccaatccaaac 25461568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 26004954 - 26004914
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  26004954 ttatgctagtagataagctaaaataagtcaatccaaacagg 26004914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 34117505 - 34117473
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatc 57  Q
    |||||||||||||||||||| ||||||||||||    
T  34117505 ttatgccagtagataagctccaataagccaatc 34117473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 35299887 - 35299919
Alignment:
Q  34 tagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||| ||||||||||||||    
T  35299887 tagataagctcaaataagtcaatccaaacaggc 35299919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 36797047 - 36797007
Alignment:
Q  30 ccagtagataagctcaaataagccaatccaaacaggcataa 70  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  36797047 ccagtagagaagctcagataagtcaatccaaacaggcataa 36797007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 159923 - 159889
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||||||||||||||||||||    
T  159923 agtagataagctcaaataagccaatccaaacaggc 159889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 1418532 - 1418570
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  1418532 ttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 11619115 - 11619077
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaaca 63  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  11619115 ttatgtcagtagataagctcaaataagccaatccaaaca 11619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 3610693 - 3610656
Alignment:
Q  29 gccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||||||||||||||||||||||||| |||||||||    
T  3610693 gccagtagataagctcaaataagccaattcaaacaggc 3610656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 5947354 - 5947395
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  5947354 ttataccaatagataagctcaaataagccaatccaaacaggc 5947395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40252080 - 40252039
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  40252080 ttatgctagtagataagctcaaataagccaattcaaacaggc 40252039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 46082149 - 46082193
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggcata 69  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||    
T  46082149 ttatgccagtaggtaagatcaaattagccaatccaaacaggcata 46082193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 425780 - 425745
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaa 60  Q
    |||||||||||||||| |||||||||||||||||||    
T  425780 ttatgccagtagataatctcaaataagccaatccaa 425745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 529475 - 529510
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaa 60  Q
    ||||||||||||||||||||||||||| ||||||||    
T  529475 ttatgccagtagataagctcaaataagtcaatccaa 529510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 32410653 - 32410688
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaa 60  Q
    |||||||| |||||||||||||||||||||||||||    
T  32410653 ttatgccaatagataagctcaaataagccaatccaa 32410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 7513672 - 7513709
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaac 62  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  7513672 ttatgccagtagataagctcaaataagtcaattcaaac 7513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 17944300 - 17944259
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||| ||||||| || |||||||||||    
T  17944300 ttatgccagtagataagcttaaataagtcactccaaacaggc 17944259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 40687505 - 40687460
Alignment:
Q  24 attatgccagtagataagctcaaataagccaatccaaacaggcata 69  Q
    ||||||| |||| ||||||| ||||||||||||| |||||||||||    
T  40687505 attatgctagtatataagctaaaataagccaatcaaaacaggcata 40687460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 3836636 - 3836604
Alignment:
Q  29 gccagtagataagctcaaataagccaatccaaa 61  Q
    ||||||||||||||||||||||| |||||||||    
T  3836636 gccagtagataagctcaaataaggcaatccaaa 3836604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 19302520 - 19302480
Alignment:
Q  25 ttatgccagtagataagctcaaataagccaatccaaacagg 65  Q
    ||||| ||||||||||||||||||||| |||| ||||||||    
T  19302520 ttatgtcagtagataagctcaaataagtcaattcaaacagg 19302480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 29363628 - 29363660
Alignment:
Q  32 agtagataagctcaaataagccaatccaaacag 64  Q
    |||||||||| ||||||||||||||||||||||    
T  29363628 agtagataagttcaaataagccaatccaaacag 29363660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  27 atgccagtagataagctcaaataagccaatccaaaca 63  Q
    |||| |||||||||||||||||||| |||||||||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 48470166 - 48470198
Alignment:
Q  34 tagataagctcaaataagccaatccaaacaggc 66  Q
    ||||||||||||||||||||||||| |||||||    
T  48470166 tagataagctcaaataagccaatcctaacaggc 48470198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University