View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6504_low_5 (Length: 211)
Name: NF6504_low_5
Description: NF6504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6504_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 2821834 - 2822022
Alignment:
| Q |
10 |
atcatcatgatttttctacaaactcttcaaatgagtctcataataataaggatgaacaagaccaagagattgagaaggtatgtatataatgagaattttg |
109 |
Q |
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| T |
2821834 |
atcatcatcatttttctacaaactcttcaaatgagtctcggaataataaggatgaacaagaccaagagattgagaaggtatgtatataatgagaattttg |
2821933 |
T |
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| Q |
110 |
a-nnnnnnnncatgttcataaatttttaatttttattatgaccctttatttgaaatggaagaatatttaatgggttgttgttagttttg |
197 |
Q |
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| T |
2821934 |
atttttttttcatgttcataaatttttaattttgattatgaccctttatttgaaatggaagaatatttaattggttgttgttagttttg |
2822022 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 3773965 - 3774029
Alignment:
| Q |
128 |
aaatttttaatttttattatgaccctttatttgaaatggaagaatatttaatgggttgttgttag |
192 |
Q |
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| T |
3773965 |
aaattttttatttttagagtgaccctttatttgaaatgtgaaaatatttagtgggttggtgttag |
3774029 |
T |
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