View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6505_high_1 (Length: 832)
Name: NF6505_high_1
Description: NF6505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6505_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 292 - 819
Target Start/End: Complemental strand, 42670959 - 42670432
Alignment:
| Q |
292 |
cacatgtatgttgtaatcattgaaaattttctactaaatgcacttgtaatatgaaaatccaaggataatgaaacacgacacttactatatctacacagcc |
391 |
Q |
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| T |
42670959 |
cacatgtatgttctaatcattgaaaattttctactaaatgcacttgtaatatgaaaatccaaggataatgaaacacgacacttactatatctacacagcc |
42670860 |
T |
|
| Q |
392 |
atagctgagatccattatgcagaattctgctttcgaaggccgagttgcatcagctgtagtagcgagtaatgcagcatgtcaataagcaatgctacttcct |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670859 |
atagctgagatccattatgcagaattctgctttcgaaggccgagttgcatcagctgtagtagcgagtaatgcagcatgtcaataagcaatgctacttcct |
42670760 |
T |
|
| Q |
492 |
tactatgaaccaaaactgaagacacgtgccactgccgtatagagttgctcttcttcaaatggctttgacacaaagtcatccatcccacattttttgcatt |
591 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670759 |
tactatgaaccaaaactgaagacacatgccactgccgtatagagttgctcttcttcaaatggctttgacacaaagtcatccatcccacattttttgcatt |
42670660 |
T |
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| Q |
592 |
cttcatttgatgcttgagttacatcagctgtcatagctagtattggtatgtgccaataagaaatgttaccaaacatctctgccaattcttccccacaagc |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670659 |
cttcatttgatgcttgagttacatcagctgtcatagctagtattggtatgtgccaataagaaatgttaccaaacatctctgccaattcttccccacaagc |
42670560 |
T |
|
| Q |
692 |
aattttttcatttacctcgttctccatataccggattcgcctagtcacctcaaaactgcaacatgtaagaagaaaatacttgtaaattatacttgcatac |
791 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670559 |
aattttttcatttacctcgttctccatataccggattcgcctagtcacctcaaaactgcaacatgtaagaagaaaatacttgtaaattatacttgcatac |
42670460 |
T |
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| Q |
792 |
aaaagtcaaaaacaaactaaacagatga |
819 |
Q |
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| T |
42670459 |
aaaagtcaaaaacaaactaaacagatga |
42670432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 42671232 - 42671022
Alignment:
| Q |
18 |
atatcctacttgctcgatacgaatatagaacgaaaaatatgatatgtacatataaatttaatcttgactcctgttcaccactgctcctgcaatgagtgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671232 |
atatcctacttgctcgatacgaatatagaacgaaaaatatgatatgtacatataaatttaatcttgactcctgttcaccactgctcctgcaatgagtgat |
42671133 |
T |
|
| Q |
118 |
tccatgtcatatattgcagttgaaattaactttctgaaaagaggacaagtgaaaaactgttaataagtaaatagtaataaaatattttaaatcaaacatt |
217 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671132 |
tccatgtaatatattgcagttgaaatcaactttctgaaaagaggacaggtgaaaaactgttaataagtaaatagtaataaaatattttaaatcaaacatt |
42671033 |
T |
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| Q |
218 |
gtagatgtgaa |
228 |
Q |
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||||||||||| |
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| T |
42671032 |
gtagatgtgaa |
42671022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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