View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6505_low_2 (Length: 357)
Name: NF6505_low_2
Description: NF6505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6505_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 28609660 - 28609991
Alignment:
| Q |
11 |
catcatcataaagacccatctctgcatatccagatatcaaggaattccacggaaacgcatacatatccctcttagtcatttgatcaaacaagtcatgtgc |
110 |
Q |
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| T |
28609660 |
catcatcataaagacccatctctgcatatccagatatcaacgaattccacggaaacgcatacatatccctcttagtcatttgatcaaacaagtcatgtgc |
28609759 |
T |
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| Q |
111 |
atcatccatatacccaaatgaagcatacaacctaacaagtttagaacttattccaacatttctatgcaaaagggctggtgggataagacggtgaagccgg |
210 |
Q |
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| T |
28609760 |
atcatccatatacccaaatgaagcatacaacctaacaagtttagaacttattccaacatttctatgcaaaagggctggtgggataagacggtgaagccag |
28609859 |
T |
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| Q |
211 |
ataccatgatgaatagctccgaaacggtaacaagtttctaacaaagaagcataaatttcagggtcaattttgatgcctttctccaatgaagcctcaaggt |
310 |
Q |
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| T |
28609860 |
ataccgtgatgaatagctccgaaacggtaacaagtttctaacaaagaagcataaatttcagggtcaattttgatgcctttctccaatgaagcttcaaggt |
28609959 |
T |
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| Q |
311 |
cattgagaacttgttcaagtgcttgaaatttg |
342 |
Q |
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| T |
28609960 |
cattgagaacttgttcaagtgcttgaaatttg |
28609991 |
T |
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