View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6505_low_4 (Length: 289)

Name: NF6505_low_4
Description: NF6505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6505_low_4
NF6505_low_4
[»] chr7 (2 HSPs)
chr7 (47-281)||(42294832-42295066)
chr7 (22-51)||(29823983-29824012)
[»] chr8 (1 HSPs)
chr8 (22-51)||(8297193-8297222)
[»] chr6 (4 HSPs)
chr6 (22-51)||(5443645-5443674)
chr6 (22-51)||(14873651-14873680)
chr6 (22-51)||(27923703-27923732)
chr6 (22-51)||(34709870-34709899)
[»] chr5 (2 HSPs)
chr5 (22-51)||(9119499-9119528)
chr5 (22-51)||(24624909-24624938)
[»] chr4 (2 HSPs)
chr4 (22-51)||(13392705-13392734)
chr4 (22-51)||(13395844-13395873)
[»] chr3 (1 HSPs)
chr3 (22-51)||(4758089-4758118)
[»] chr1 (1 HSPs)
chr1 (22-51)||(52505928-52505957)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 42294832 - 42295066
Alignment:
Q  47 ttatactactaatatatgatatgataaatatttatnnnnnnnnnggttattcaaaaagataaatttcacgtcaatccatcgcaataatgtttaaattttt 146  Q
    ||||||||||||||||||||||||||||| ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42294832 ttatactactaatatatgatatgataaatgttta-aaaaaaaaaggttattcaaaaagataaatttcacgtcaatccatcgcaataatgtttaaattttt 42294930  T
Q  147 gtaaaataagtaaataattatcataatatttgatcgattaacatgactttgataactcaaaagtacttgaatgagatga-nnnnnnnncttcgaagaaat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||     
T  42294931 gtaaaataagtaaataattatcataatatttgatcgattaacatgactttgataactcaaaagtacttgaatgagatgatttttttttcttcgaagaaac 42295030  T
Q  246 taaactagctcatttaaattgacaccgagaataatc 281  Q
    |||| |||||||||||||||||||||||| ||||||    
T  42295031 taaattagctcatttaaattgacaccgaggataatc 42295066  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 29824012 - 29823983
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  29824012 atgttaaaatttatactcccctctcttata 29823983  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 8297193 - 8297222
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  8297193 atgttaaaatttatactcccctctcttata 8297222  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 5443674 - 5443645
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  5443674 atgttaaaatttatactcccctctcttata 5443645  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 14873680 - 14873651
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  14873680 atgttaaaatttatactcccctctcttata 14873651  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 27923732 - 27923703
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  27923732 atgttaaaatttatactcccctctcttata 27923703  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 34709899 - 34709870
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  34709899 atgttaaaatttatactcccctctcttata 34709870  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 9119528 - 9119499
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  9119528 atgttaaaatttatactcccctctcttata 9119499  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 24624909 - 24624938
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  24624909 atgttaaaatttatactcccctctcttata 24624938  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 13392734 - 13392705
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  13392734 atgttaaaatttatactcccctctcttata 13392705  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 13395873 - 13395844
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  13395873 atgttaaaatttatactcccctctcttata 13395844  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 4758118 - 4758089
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  4758118 atgttaaaatttatactcccctctcttata 4758089  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 52505957 - 52505928
Alignment:
Q  22 atgttaaaatttatactcccctctcttata 51  Q
    ||||||||||||||||||||||||||||||    
T  52505957 atgttaaaatttatactcccctctcttata 52505928  T

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