View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6506_high_1 (Length: 619)
Name: NF6506_high_1
Description: NF6506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6506_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 106 - 609
Target Start/End: Original strand, 37864837 - 37865340
Alignment:
| Q |
106 |
atttgatataggttcaatcaatcgaacttaatcttacttaagatgtttcagttactaaatatttgtacctcagagtcgtatctaattgcatattattagt |
205 |
Q |
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| T |
37864837 |
atttgatatcggttcaatcaatcgaacttaatcttatttaagatgtttcagttactaaatatttgtacctcagagtcgtatctaattgcatattattagt |
37864936 |
T |
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| Q |
206 |
tctaatttttagttttaaggtcgtatatgattaagtggttcatgccattgatgggttaaaattgtacaactggttcggtaagtagttttaatttttagaa |
305 |
Q |
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| T |
37864937 |
tctaatttttagttttaaggtcgtatatgattaagtggttcatgccattgatgggttaaaattgtacaactggttcggtaagtagttttaatttttagaa |
37865036 |
T |
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| Q |
306 |
cgaggagaaaacgaggagaaaaatgttcaactggttcggtaagtttatttattttagaaatttgattctactaaagattctaactaacttattttcttct |
405 |
Q |
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| T |
37865037 |
cgaggagaaaacgaggagaaaaatgtacaactggttcggtaagtttatttattttagaaatttgattctactaaagattctaactaacttattttcttct |
37865136 |
T |
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| Q |
406 |
tagttccattcaacttccctctcaagccatgcttcgttgacatagccattatcagttcatgcaaggttggccgcaacactgtgctatgaatcattaatga |
505 |
Q |
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| T |
37865137 |
tagttccattcaacttccctctcaagccatgcttcgttgacatagccattatcagttcatgcaaggttggctgcaacactgtgctatgaatcattaatga |
37865236 |
T |
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| Q |
506 |
aactgatattaactttcttaaacttggtaaaacctctcaaatttacaatattcagctctaaaactatttcttgcaatcgaattgataatatctcataccc |
605 |
Q |
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| T |
37865237 |
tactgatattaactttcttaaacttggtaaaacctctcaaatttacaatcttcagctctaaaactatttcttgcaatcgaattgataatatctcataccc |
37865336 |
T |
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| Q |
606 |
tttg |
609 |
Q |
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| T |
37865337 |
tttg |
37865340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 37863857 - 37863936
Alignment:
| Q |
17 |
aataacttagtggaggttagtgtctagtacaaaactagagaaggtgtttgtgttgttttggggaggcgagcctaattttc |
96 |
Q |
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| T |
37863857 |
aataacttagtggaggttagtgtctagtacaaaactagagaaggtgtttgtgttgttttgggcgggcgagcctaattttc |
37863936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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