View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6506_high_5 (Length: 286)
Name: NF6506_high_5
Description: NF6506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6506_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 44953651 - 44953904
Alignment:
| Q |
21 |
acagttaacatatattctataggacttgatttaagacatgtcggcattgagtccaatttgatatcattttctcccttttccttgcctttcttggggttca |
120 |
Q |
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| T |
44953651 |
acagttaacatatattctataggacttgatttaagacatgtcggcattgagtccaatttgatatcattttctcccttttccttgcctttcttggggttca |
44953750 |
T |
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| Q |
121 |
atttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtatacaaaaattgaagtataccgaaga |
220 |
Q |
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| T |
44953751 |
atttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagattaagtatacaaaaattgaagtataccgaaga |
44953850 |
T |
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| Q |
221 |
ttgattgacatgagataaacataaaatttgagattccatgccaaatgatgatgt |
274 |
Q |
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| T |
44953851 |
ttgattgacatgagataaacataaaatttgagattccatgccaaatgataatgt |
44953904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 44994845 - 44994770
Alignment:
| Q |
122 |
tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtata |
197 |
Q |
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| T |
44994845 |
tttatgtactactacatatgtcaatttctgacaaattgttgatatatttcaaacaggttgaaatagatgaagtata |
44994770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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