View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6506_high_8 (Length: 247)
Name: NF6506_high_8
Description: NF6506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6506_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 24564453 - 24564674
Alignment:
| Q |
11 |
cacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacgggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24564453 |
cacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatgtaatcacatgtatctatattttgtaggcgacgaatacggga |
24564552 |
T |
|
| Q |
111 |
acgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttcaattgat |
210 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24564553 |
acgtatcagacacc-aaacacgcctatgattataagcgtcgatgccacataaattagtattgcaattcaccaaatgaaaattacattcacttcaattgat |
24564651 |
T |
|
| Q |
211 |
ataaggaagtcccagtagaatct |
233 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24564652 |
ataaggaagtcccagtagaatct |
24564674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 9800683 - 9800890
Alignment:
| Q |
14 |
agagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacg |
113 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
9800683 |
agagacactaacatctgaataccgataattattt-aaaaaataatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggaca |
9800781 |
T |
|
| Q |
114 |
tatcaaacaccaaaacacgcctatgatta-taagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatat |
212 |
Q |
| |
|
||| | |||||||| |||||||||||||| ||||| |||||| ||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
9800782 |
tatgagacaccaaa-cacgcctatgattaataagcttcgatgctacataaattagcattgcaatttaccaaatgaaaattacattcatttcaattgatat |
9800880 |
T |
|
| Q |
213 |
aaggaagtcc |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
9800881 |
aaggaagtcc |
9800890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 45534943 - 45534829
Alignment:
| Q |
100 |
cgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattca |
199 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
45534943 |
cgaatacggggacgtattagacaccaaa-catgcctatgattataagtgtcgacgctacataaattagcattgcaattcaccaaataaaaattacattca |
45534845 |
T |
|
| Q |
200 |
cttcaattgatataag |
215 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
45534844 |
cttcaattgacataag |
45534829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 44338497 - 44338689
Alignment:
| Q |
13 |
cagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggac |
112 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||| | ||| ||| | |||| |||||||||| ||||||||||||| ||| | |||||| ||||| |
|
|
| T |
44338497 |
cagagacattaacatgtgaacaaagacaattatttgagaaa-taacacaattaaatataatcatatgtatctatatcatgtcgatctcgaatattgggac |
44338595 |
T |
|
| Q |
113 |
gtatcaaacac-caaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttcaa |
205 |
Q |
| |
|
|| || |||| | | |||| | |||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44338596 |
gtttcggacacgctagacacacatatgataataagcattgatgctacataaattagcattgcaattcaccaaatgaaaattacattcacttcaa |
44338689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 45535007 - 45534957
Alignment:
| Q |
14 |
agagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
64 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
45535007 |
agagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
47 |
ttaaaaaataatataattcaatataatcacatgtatc |
83 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
31 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
80 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 23095791 - 23095846
Alignment:
| Q |
157 |
acataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatat |
212 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||| || ||||||| |
|
|
| T |
23095791 |
acataaattagcattgcaatttaccaaatgaaaattaccttcactacagttgatat |
23095846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
44 |
attttaaaaaataatataattcaatataatcacatgtatct |
84 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University