View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6506_low_12 (Length: 236)
Name: NF6506_low_12
Description: NF6506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6506_low_12 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18332983 - 18333214
Alignment:
| Q |
1 |
tcgaaattgcggtttcagagacctcaaaatcctttatattgcgcctgcaatttcagttatgtaccacaatttaaaaccgtgctcaatacaatatatcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
18332983 |
tcgaaattgcggtttcagagacctcaaaatcctttatattgcgcctgcaatttcagttatgtaccacaatttaaaaccatgatcaatacaatatatcttg |
18333082 |
T |
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| Q |
101 |
agaatgatatcaatagaataatggagcatttaaatatgtcagcaattatgattttgcagtggcttgttgagtacaatgctgctttagcatgcgtctgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18333083 |
agaatgatatcaatagaataatggagcatttaaatatgtcagcaattatgattttgcagtggcttgttgagtacaatgctgctttagcatgcgtatgttt |
18333182 |
T |
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| Q |
201 |
catgacattgcttggatttgttgatgatgtcc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18333183 |
catgacattgcttggatttgttgatgatgtcc |
18333214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14597379 - 14597149
Alignment:
| Q |
1 |
tcgaaattgcggtttcagagacctcaaaatcctttatattgcgcctgcaatttcagttatgtaccacaatttaaaaccgtgctcaatacaatatatcttg |
100 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||| | |||||||||||| | | || ||| ||| ||||| |
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| T |
14597379 |
tcgaaattgcggttgcagagacctcaaa-tcctttatattgcgcttgcaattttagttatcaatcacaatttaaaatcattatccgtaccatacgtcttg |
14597281 |
T |
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| Q |
101 |
agaatgatatcaatagaataatggagcatttaaatatgtcagcaattatgattttgcagtggcttgttgagtacaatgctgctttagcatgcgtctgttt |
200 |
Q |
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| T |
14597280 |
agaatgatatcaatagaatattggagcatttaaatatatcagaaattatgattttgcagtggcttgtggagtacaatgctgctttagcatgcatctgttt |
14597181 |
T |
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| Q |
201 |
catgacattgcttggatttgttgatgatgtcc |
232 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
14597180 |
catgacattgcttggatttgtcgatgatgtcc |
14597149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39433 - 39663
Alignment:
| Q |
1 |
tcgaaattgcggtttcagagacctcaaaatcctttatattgcgcctgcaatttcagttatgtaccacaatttaaaaccgtgctcaatacaatatatcttg |
100 |
Q |
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|
|||||||| ||||| ||||||||||||| |||| |||||||||| |||||||| |||||| | |||||||||||| | | || ||| ||| ||||| |
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| T |
39433 |
tcgaaattacggttgcagagacctcaaa-tcctatatattgcgcttgcaattttagttatcaatcacaatttaaaatcattatccgtaccatacgtcttg |
39531 |
T |
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| Q |
101 |
agaatgatatcaatagaataatggagcatttaaatatgtcagcaattatgattttgcagtggcttgttgagtacaatgctgctttagcatgcgtctgttt |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
39532 |
agaatgatatcaatagaatattggagcatttaaatatatcagaaattatgattttgcagtggcttgtggagtacaatgctgctttagcatgcatctgttt |
39631 |
T |
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| Q |
201 |
catgacattgcttggatttgttgatgatgtcc |
232 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
39632 |
catgacattgcttggatttgtcgatgatgtcc |
39663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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