View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6506_low_9 (Length: 264)
Name: NF6506_low_9
Description: NF6506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6506_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 52467640 - 52467413
Alignment:
| Q |
15 |
cacagacgcaaagtttaatgtaaagtgatttatatttgacaagttctgtttcaacagtaagtttataataaattcaacacaaaatttgaccatgacacag |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52467640 |
cacaaacgcaaagtttaatgtaaagtgatttatatttgacaagttctgtttcaacagtaagtttataataaattcaacacaaaatttgaccatgacacag |
52467541 |
T |
|
| Q |
115 |
aagcaacattttctcacttcttaagctaacatgtgtttggaagtaaaatcatgtttgcttagaacttagaagtgactaacgcccnnnnnnnncttccgaa |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52467540 |
aagcaacattttctca---cttaagctaacatgtgtttggaagtaaaatcatgtttgcttagaacttagaagtgactaacgcccttttttttcttccgaa |
52467444 |
T |
|
| Q |
215 |
aacacaattgagagctccatacagaggttag |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52467443 |
aacacaattgagagctccatacagaggttag |
52467413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University