View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6507_high_12 (Length: 443)
Name: NF6507_high_12
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 12365214 - 12365630
Alignment:
| Q |
15 |
tatatattatgcccatatttttcccagctaaagcaatgcaccagcatctcatgaatcctaagaatcacaagtcattaatctggactgcactcgaatggta |
114 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12365214 |
tatatattatgcccatctttgtcccaactgaagcaatgtgccagcatctcatgaatcctaagaatcacaagtcattaatctggactgcactcgaatggta |
12365313 |
T |
|
| Q |
115 |
ctctcctttagaatggtggagaaaccaacttggaccagtcctaagtgaagtaagaaaaagaagaatggcaccagagactactggcaaacccaagacagtc |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
12365314 |
ctctcctttagaatggtggagaatccaacttggaccagtcctaagtgaagtaagaaaaagaggaatggcaccagaggctattggcaaactcaagacagtc |
12365413 |
T |
|
| Q |
215 |
ttcactgtgcacagatcatatcacatagatcctaggactaaattcctcatttgtaaaaattatgcagatatatgggaaactattgatgattatcctccaa |
314 |
Q |
| |
|
|| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12365414 |
ttaactgtgcacagaccatatcagatagatcccaggactaaattccttatttgtaaaaattatgcagatatatgggaaactattgatgattatcctccaa |
12365513 |
T |
|
| Q |
315 |
gcttaaaggttaccaaagacttaatggattatatcagttttattaatctccaagacagagaaaagactcaaattgatactatttgtataagtcatgggaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12365514 |
gcttaaaggttaccaaagacttaatggattatatcaattttactaatctccatcacagagaaaagactcaaattgatactacatgtataagtcatgggaa |
12365613 |
T |
|
| Q |
415 |
tcttccaccgcaattca |
431 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12365614 |
tcttccaccgcaattca |
12365630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University