View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_high_19 (Length: 324)

Name: NF6507_high_19
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_high_19
NF6507_high_19
[»] chr1 (9 HSPs)
chr1 (13-324)||(9241974-9242285)
chr1 (13-324)||(9364759-9365070)
chr1 (13-324)||(9337900-9338208)
chr1 (18-324)||(9466173-9466479)
chr1 (49-318)||(8927319-8927591)
chr1 (65-255)||(9300525-9300718)
chr1 (49-320)||(8939743-8940014)
chr1 (173-277)||(8962713-8962817)
chr1 (141-255)||(9257067-9257181)
[»] chr6 (1 HSPs)
chr6 (13-324)||(15909830-15910138)
[»] scaffold0690 (2 HSPs)
scaffold0690 (13-324)||(1968-2276)
scaffold0690 (13-320)||(4971-5280)
[»] chr3 (1 HSPs)
chr3 (13-311)||(9171878-9172176)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 9241974 - 9242285
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  9241974 aatattagcatttgtataagttgtagttgttggcccgaaaggattagttggtacttttaacatgtccccctctccttgaagtatttgtatcacaaatttc 9242073  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggattt 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9242074 attgccggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaatttttttggaattctaaaatctccctcttcatcaatagggattt 9242173  T
Q  213 gtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaa 312  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9242174 gtatatctcctccttcaagcaaattgtggatccagtctggatactcaatttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaac 9242273  T
Q  313 catctccaacaa 324  Q
    ||||||||||||    
T  9242274 catctccaacaa 9242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 9365070 - 9364759
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9365070 aatattagcatttgtattagttgtagttgttggtccgaacggattagtaggcacttttaacttgtccccctctccttgaagcatttgtatcacatatttc 9364971  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggattt 212  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  9364970 attgtcggacggtgcaaagggtgccattggatacaccatagtcccacagttgccaatttttttggaattctaaaatctccctcttcatcaatagggatat 9364871  T
Q  213 gtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaa 312  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||   |||||||||||||||||||||||||||     
T  9364870 gtatatctcctccttcaagcaaattgtggatccagtctggatactcaacttgtatattttcttcgccactaattgtttttgtattctttcttcctccaac 9364771  T
Q  313 catctccaacaa 324  Q
    ||| ||||||||    
T  9364770 catttccaacaa 9364759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 9338208 - 9337900
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    ||||||| ||||| |||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  9338208 aatattaacatttttattagttgtagttgttggtccaaacggattagtaggcacttttaacttgtccccctctccttggagcatttgcatcacagatttc 9338109  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggattt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  9338108 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaatttttttggaattctaaaatctccgtcttcatcaatagggattt 9338009  T
Q  213 gtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaa 312  Q
    |||| ||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||   |||||||||||||||||||||||||||     
T  9338008 gtatctctc---cttcaagcaaattgtggatccagtctggatactcaacttgtatattttcttcgccactaattgtttttgtattctttcttcctccaac 9337912  T
Q  313 catctccaacaa 324  Q
    ||| ||||||||    
T  9337911 catttccaacaa 9337900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 9466173 - 9466479
Alignment:
Q  18 tagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttcattgt 117  Q
    ||||| ||| |||||||| |||||| || || ||||||||  | || ||||||||| |||| || || ||||| |||||||||||||||| |||||| |     
T  9466173 tagcagttgaattagttgaagttgtaggcccaaaaggattgctggggacttttaacttgtctccatcaccttgtagcatttgtatcacagttttcatgga 9466272  T
Q  118 cggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggatttgtata 217  Q
     |||||||||| ||| ||||| ||||| ||||  ||||| ||| | ||||  ||||||||||| || |||||||||||||| |||||||||||||||||     
T  9466273 tggacgatgcataggttgccactggatgcaccgaagtccaacaatcgccattttttttggaatcctgaaatctccctcttcgtcaatagggatttgtatg 9466372  T
Q  218 tctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaacatct 317  Q
    |||||  |||||||||||| ||||||||| ||||||||   |||||||| ||||||||||||    ||||| |||||||||||||||||| ||| |||||    
T  9466373 tctcccccttcaagcaaatcgtggatccaatctggatatagaacttgtaaattttcttcacctgtggttgtgtttgtattctttcttcctgcaaccatct 9466472  T
Q  318 ccaacaa 324  Q
    |||||||    
T  9466473 ccaacaa 9466479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 318
Target Start/End: Complemental strand, 8927591 - 8927319
Alignment:
Q  49 gaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttcattgtcggacgatgcaaagggtgccattggatacac 148  Q
    ||||||||| || || ||||||||  |||| ||||||||||||||||| || | ||||| |||||| | ||| |||||||  | |||||| || || |||    
T  8927591 gaaaggattggtgggaacttttaatttgtctccctctccttgaagcatctgcaccacagttttcatggacggccgatgcacggagtgccactgaatgcac 8927492  T
Q  149 catagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggatttgtatatctccttcttcaagcaaattgtggatccagt 248  Q
    || ||||| ||| |||| |  ||||||| ||||||| ||||||||||||||||||| ||||| | ||  |||||  ||||||| |||   |||||||| |    
T  8927491 caaagtccgacaattgctagtttttttgcaattctacaatctccctcttcatcaattgggatatatacgtctccaccttcaagtaaaccatggatccaat 8927392  T
Q  249 ctggatacccaacttgtatattttcttcaccacc---tgttgtttttgtattctttcttcctccaaacatctc 318  Q
    ||||||||  |||||| | ||||||||| |||||    |||||||| ||||||||||||||||||| ||||||    
T  8927391 ctggatacagaacttggaaattttcttcgccaccagtagttgttttagtattctttcttcctccaaccatctc 8927319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 9300718 - 9300525
Alignment:
Q  65 acttttaacatgtccccctctccttgaagcatttgtatcacagatttcattgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttg 164  Q
    ||||||| | |||| ||||||||||| | |||||| | ||||| |||||| | ||||||||||| ||| ||||| || || ||||||| ||||||| |||    
T  9300718 acttttagcttgtctccctctccttgtaacatttgcaacacagttttcatggacggacgatgcataggttgccactgaatgcaccataatcccacaattg 9300619  T
Q  165 ccaacttttttggaattctaaaatctccc---tcttcatcaatagggatttgtatatctccttcttcaagcaaattgtggatccagtctggata 255  Q
    |||  ||||||| |||||| |||||  ||   |||||||| |||||||||||||| |||||| ||||||  ||| |||||||||| ||||||||    
T  9300618 ccattttttttgcaattctgaaatcatcctgttcttcatctatagggatttgtatgtctcctccttcaactaaactgtggatccaatctggata 9300525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 320
Target Start/End: Complemental strand, 8940014 - 8939743
Alignment:
Q  49 gaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttcattgtcggacgatgcaaagggtgccattggatacac 148  Q
    ||||||||| || || ||||||||  |||| ||||||||||||||||| || | |||||||||||| | ||| |||||||  | |||||| || || |||    
T  8940014 gaaaggattggtgggaacttttaatttgtctccctctccttgaagcatctgaaccacagatttcatggacggtcgatgcacggagtgccactgaatgcac 8939915  T
Q  149 catagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggatttgtatatctccttcttcaagcaaattgtggatccagt 248  Q
    || ||||| ||| | || |  || |||| ||||||||||||||||||||||||||| ||||| | ||  |||||  ||||||  |||   |||||||| |    
T  8939914 caaagtccgacaatcgctagtttctttgcaattctaaaatctccctcttcatcaattgggatatatacgtctccaccttcaaataaaccatggatccaat 8939815  T
Q  249 ctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaacatctcca 320  Q
    ||||||||   ||||| | ||||||||||||      ||| || ||||||||||||||||||| ||||||||    
T  8939814 ctggatacaatacttgaaaattttcttcacctgtgactgtcttagtattctttcttcctccaaccatctcca 8939743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 8962817 - 8962713
Alignment:
Q  173 tttggaattctaaaatctccctcttcatcaatagggatttgtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatatttt 272  Q
    |||| ||||||| ||||||| ||||||||||||||||| |||||||||||  |||||| ||||  ||||||||| |||||||||  |||||| | |||||    
T  8962817 tttgcaattctataatctccatcttcatcaatagggatatgtatatctcccccttcaaacaaaccgtggatccaatctggatacaaaacttgaaaatttt 8962718  T
Q  273 cttca 277  Q
    |||||    
T  8962717 cttca 8962713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 9257067 - 9257181
Alignment:
Q  141 ggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggatttgtatatctccttcttcaagcaaattgtg 240  Q
    |||| ||||| ||||||||  ||||||| ||||| | |||||||||||||||||||||||| |||| ||| ||||| ||| || ||| |||||||  |||    
T  9257067 ggatgcaccaaagtcccacgattgccaattttttcgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctcctttaagcaaaccgtg 9257166  T
Q  241 gatccagtctggata 255  Q
    |||||| ||||||||    
T  9257167 gatccaatctggata 9257181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 15909830 - 15910138
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    |||||| | |||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||    
T  15909830 aatattggaatttgtcttagttttagttgttggtccgaaaggatttgttggtacttttaacttgtccgcctctgcttgaagcatttttatcacagatttc 15909929  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggattt 212  Q
    ||||| || ||||| ||||||||||||||||||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15909930 attgttggtcgatgtaaagggtgccattggatacaccacagaccgacggttgccaatttttttggaattctaaaatctccctcttcatcaatagggattt 15910029  T
Q  213 gtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaa 312  Q
    |||||||||   |||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||     
T  15910030 gtatatctc---cttcaaacaaattgtggatccagtctggatactcaacttgtatgttttcatcaccacttgttgtttttgtattctttcttcctccaac 15910126  T
Q  313 catctccaacaa 324  Q
    ||||||||||||    
T  15910127 catctccaacaa 15910138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 2276 - 1968
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    |||||| | |||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||    
T  2276 aatattggaatttgtcttagttttagttgttggtccgaaaggatttgttggtacttttaacttgtccgcctctgcttgaagcatttttatcacagatttc 2177  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggattt 212  Q
    |||||||| ||||| ||||||||||||||||||||||| || || || |||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  2176 attgtcggtcgatgtaaagggtgccattggatacaccacagaccgacggttgccaatttttttggaattctaaaatctctctcttcatcaatagggattt 2077  T
Q  213 gtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaa 312  Q
    |||||||||   |||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||     
T  2076 gtatatctc---cttcaaacaaattgtggatccagtctggatactcaacttgtatgttttcatcaccacttgttgttttcgtattctttcttcctccaac 1980  T
Q  313 catctccaacaa 324  Q
    ||||||||||||    
T  1979 catctccaacaa 1968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 5280 - 4971
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    |||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||    
T  5280 aatattagcatttgtattggttgtagttgttggttcgaacagattagttggtacttttaatttgtccccctctccgtgaagcatttgtatcagagatttc 5181  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaact-----tttttggaattctaaaatctccctcttcatcaatagg 207  Q
    || | | |||||| || |||||||||| ||||||| ||||||| |||||||||||| |     ||||||||  ||||||||| || ||||||||||||||    
T  5180 atcgccagacgattcatagggtgccataggatacaacatagtctcacagttgccaaattttaatttttggatatctaaaatccccgtcttcatcaatagg 5081  T
Q  208 gatttgtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcct 307  Q
    ||||  ||| ||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  5080 gattattatctctc---cttcaagcaaattgtggatccagtctggatactcaacttgtatattttcttcaccaccgtttgtttttgtattctttcttcct 4984  T
Q  308 ccaaacatctcca 320  Q
    |||| ||||||||    
T  4983 ccaaccatctcca 4971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 9172176 - 9171878
Alignment:
Q  13 aatattagcatttgtattagttgtagttgttggtccgaaaggattagttggtacttttaacatgtccccctctccttgaagcatttgtatcacagatttc 112  Q
    |||||||| | ||||||||| || |||||| |||||  |||| || |  || |||| |||| |||| || |||||||| |||||||| ||||||| ||||    
T  9172176 aatattagtagttgtattagatgaagttgtaggtccataagggtttgaaggaacttgtaacttgtctccatctccttgcagcatttgcatcacagttttc 9172077  T
Q  113 attgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaacttttttggaattctaaaatctccctcttcatcaatagggattt 212  Q
    || | ||||||||||| ||| ||||||||||| ||||| ||||||||  ||||||| ||||| | |||||||||||||||||| ||||| || |||||||    
T  9172076 atagacggacgatgcataggttgccattggatgcaccaaagtcccacgattgccaattttttcgcaattctaaaatctccctcatcatctattgggattt 9171977  T
Q  213 gtatatctccttcttcaagcaaattgtggatccagtctggatacccaacttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaa 311  Q
    |||| |||||| ||||||||||| |||||||||| |||||||||  |||||| | ||||||||||      ||||| ||||||||||||||||||||||    
T  9171976 gtatttctcctccttcaagcaaactgtggatccaatctggatacagaacttgaaaattttcttcatttgtggttgtgtttgtattctttcttcctccaa 9171878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University