View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6507_high_2 (Length: 810)
Name: NF6507_high_2
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_2 |
 | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (5 HSPs) |
| | |
|
| [»] scaffold1330 (1 HSPs) |
| | |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 722; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 19 - 800
Target Start/End: Original strand, 7457630 - 7458411
Alignment:
| Q |
19 |
ataaggagtcgctggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtc |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7457630 |
ataaggagtcgttggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtc |
7457729 |
T |
|
| Q |
119 |
aattggaaaaatgttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7457730 |
aattggaaaaatgttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtggttgtgatccatgtggcaacatc |
7457829 |
T |
|
| Q |
219 |
ttgagctcagctgagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatg |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7457830 |
ttgagctcagctgagatttacaactcagacactggaaaatgggaaacccttccaaacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatg |
7457929 |
T |
|
| Q |
319 |
gaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7457930 |
aaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacc |
7458029 |
T |
|
| Q |
419 |
caacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgat |
518 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458030 |
caacatgttcccaatgccaactggagtattggaggcaccaccatcttatggaccacctcccttgattgcagttgtaaaaaatgtattgtataatgctgat |
7458129 |
T |
|
| Q |
519 |
tacgcaacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggat |
618 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7458130 |
tacgcaacaaaggaagtaaagaagtatgataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacctcaatgaaaggttggggat |
7458229 |
T |
|
| Q |
619 |
tagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaag |
718 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458230 |
tagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaag |
7458329 |
T |
|
| Q |
719 |
agcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgt |
800 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7458330 |
agcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgtatagttgcactgtgatgggatgttgatgatgt |
7458411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 31 - 800
Target Start/End: Original strand, 7411563 - 7412333
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| ||| ||| |||||| ||||||| |||||||||| |
|
|
| T |
7411563 |
tggctgttggtactgagcttctagtctttggaaaggaattaatggctcctatcattcataagtataactttctgacaaatatgtggtcagttggaaaaat |
7411662 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||||||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| ||||||||| |||||| ||| |||||||| ||| |
|
|
| T |
7411663 |
gatgaatactccaagatgcttgtttggttcggctagtcttggagaaattgcaatactagctggtggttgtgatccacgtggcagcatattgagctctgct |
7411762 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| |||| |||||||| || |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
7411763 |
gagctctataacgcagatactggaaattgggaaacccttccaaacatgaataaagcaagaaaaatgtgttggggtgtatttatggatgaaaaattttatg |
7411862 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7411863 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
7411962 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaag |
530 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7411963 |
aatgccaactggagtattggaggcaccaccatcttatggaccacctcccttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaag |
7412062 |
T |
|
| Q |
531 |
gaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtg |
630 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7412063 |
gaagtaaagaagtatgataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtg |
7412162 |
T |
|
| Q |
631 |
catgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatg |
730 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7412163 |
catgtggagatatgctaatttttcttggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatg |
7412262 |
T |
|
| Q |
731 |
gaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatg-ttgatgatgt |
800 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
7412263 |
gaatcaacttgcaagaaagaaaatagggagctttgtgtatagttgcactgtgatgggatgtttgatgatgt |
7412333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 133 - 389
Target Start/End: Original strand, 44919800 - 44920056
Alignment:
| Q |
133 |
tgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagctga |
232 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||| ||||||| | ||||||||| |||||||| |||| |
|
|
| T |
44919800 |
tgaatactcctagatgcttgtttggttctgccagcctcggagaaattgcaatattagccggtggttgtgatcaacatggcaacatattgagctcttctga |
44919899 |
T |
|
| Q |
233 |
gctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtc |
332 |
Q |
| |
|
|||||| |||||||| || || | ||| || |||||||||||||| | |||| | ||||||||| | || |||||||||| ||||||||||||| |
|
|
| T |
44919900 |
gctttataactcagataccggcacatgggaggttcttccagacatgaacacgccaaggagaatgtgttcagccgtgtttatggatgaaaaattttatgtc |
44919999 |
T |
|
| Q |
333 |
cttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgat |
389 |
Q |
| |
|
||||| ||| |||||| ||| |||||||||| ||| || |||||||| || |||||| |
|
|
| T |
44920000 |
cttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgat |
44920056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 729 - 796
Target Start/End: Original strand, 13031387 - 13031454
Alignment:
| Q |
729 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
13031387 |
tggaatcaacttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatgttgatg |
13031454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 796
Target Start/End: Complemental strand, 7419439 - 7419368
Alignment:
| Q |
725 |
acaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||||||||| ||| |||| ||||||||||| |||||| |
|
|
| T |
7419439 |
acaatggaatcagcttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatattgatg |
7419368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 31 - 796
Target Start/End: Complemental strand, 4085 - 3320
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||| || |
|
|
| T |
4085 |
tggctgttggtactgagcttctagtctttggaaaggaattaatggatcctatcattcataagtatagccttctgacaaatatgtggtcagttggaaatat |
3986 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||| ||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
3985 |
gatgaatactccgagatgcttgtttggttcggctagtcttggagaaattgcaatactagccggtggttgtgatccatgtggcaacatattgagctctgct |
3886 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
3885 |
gagctctataacgcagacactggaaattggaagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatg |
3786 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||| ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
3785 |
tccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccc |
3686 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaa |
528 |
Q |
| |
|
|| | ||||||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||| |
|
|
| T |
3685 |
cgtacgaactggagtgtttgagacaccaccttcttttgggtcacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaa |
3586 |
T |
|
| Q |
529 |
aggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcg |
628 |
Q |
| |
|
| ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
3585 |
a--aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcg |
3488 |
T |
|
| Q |
629 |
tgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaa |
728 |
Q |
| |
|
||||| |||||| ||| | ||||| |||||||| || ||||| || | ||| ||||||||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
3487 |
agcatgcggagatcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaa |
3388 |
T |
|
| Q |
729 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
||||||| ||||| |||| || |||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
3387 |
tggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg |
3320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 31 - 796
Target Start/End: Complemental strand, 10280 - 9515
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||| || |
|
|
| T |
10280 |
tggctgttggtactgagcttctagtctttggaaaggaattaatggatcctatcattcataagtatagccttctgacaaatatgtggtcagttggaaatat |
10181 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||| ||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
10180 |
gatgaatactccgagatgcttgtttggttcggctagtcttggagaaattgcaatactagccggtggttgtgatccatgtggcaacatattgagctctgct |
10081 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10080 |
gagctctataacgcagacactggaaattggaagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatg |
9981 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||| ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
9980 |
tccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccc |
9881 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaa |
528 |
Q |
| |
|
|| | ||||||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||| |
|
|
| T |
9880 |
cgtacgaactggagtgtttgagacaccaccttcttttgggtcacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaa |
9781 |
T |
|
| Q |
529 |
aggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcg |
628 |
Q |
| |
|
| ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
9780 |
a--aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcg |
9683 |
T |
|
| Q |
629 |
tgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaa |
728 |
Q |
| |
|
||||| |||||| ||| | ||||| |||||||| || ||||| || | ||| ||||||||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
9682 |
agcatgcggagatcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaa |
9583 |
T |
|
| Q |
729 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
||||||| ||||| |||| || |||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
9582 |
tggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg |
9515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 31 - 796
Target Start/End: Original strand, 34894 - 35659
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||| || |
|
|
| T |
34894 |
tggctgttggtactgagcttctagtctttggaaaggaattaatggatcctatcattcataagtatagccttctgacaaatatgtggtcagttggaaatat |
34993 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||| ||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
34994 |
gatgaatactccgagatgcttgtttggttcggctagtcttggagaaattgcaatactagccggtggttgtgatccatgtggcaacatattgagctctgct |
35093 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35094 |
gagctctataacgcagacactggaaattggaagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatg |
35193 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||| ||||||||||| ||||| |||||||| |||| |||| ||||| |||||||||| ||||||||||| |
|
|
| T |
35194 |
tccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggtgtgaaatacctaacatgttccc |
35293 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaa |
528 |
Q |
| |
|
|| | ||||||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||| |
|
|
| T |
35294 |
cgtacgaactggagtgtttgagacaccaccttcttttgggtcacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaa |
35393 |
T |
|
| Q |
529 |
aggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcg |
628 |
Q |
| |
|
| ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
35394 |
a--aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcg |
35491 |
T |
|
| Q |
629 |
tgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaa |
728 |
Q |
| |
|
||||| |||||| ||| | ||||| |||||||| || ||||| || || ||| ||||||||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
35492 |
agcatgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaa |
35591 |
T |
|
| Q |
729 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
||||||| ||||| |||| || |||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
35592 |
tggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg |
35659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 31 - 796
Target Start/End: Original strand, 48494 - 49259
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||| | |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||| || |
|
|
| T |
48494 |
tggctgttggtactgagcttctagtctttggaaaggaactaatggatcctatcattcataagtatagccttctgacaaatatgtggtcagttggaaatat |
48593 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||| ||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
48594 |
gatgaatactccgagatgcttgtttggttcggctagtcttggagaaattgcaatactagccggtggttgtgatccatgtggcaacatattgagctcggct |
48693 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
48694 |
gagctctataacgcagacactggaaattggaagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatg |
48793 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||| ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
48794 |
tccttggtgggatagcagctgaaaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccc |
48893 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaa |
528 |
Q |
| |
|
|| | ||||||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||| |
|
|
| T |
48894 |
cgtacgaactggagtgtttgagacaccaccttcttttgggtcacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaa |
48993 |
T |
|
| Q |
529 |
aggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcg |
628 |
Q |
| |
|
| ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
48994 |
a--aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcg |
49091 |
T |
|
| Q |
629 |
tgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaa |
728 |
Q |
| |
|
||||| |||||| ||| | ||||| |||||||| || ||||| || || ||| ||||||||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
49092 |
agcatgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaa |
49191 |
T |
|
| Q |
729 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
||||||| ||||| |||| || |||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
49192 |
tggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg |
49259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 33 - 796
Target Start/End: Complemental strand, 4196 - 3433
Alignment:
| Q |
33 |
gctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaatgt |
132 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||| ||| |
|
|
| T |
4196 |
gctgttggtactgagcttctagtctttggaaaggaattaatggatcctatcattcataagtatagccttctgacaaatatgtggtcagttggaaatatga |
4097 |
T |
|
| Q |
133 |
tgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagctga |
232 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||| | ||||| |
|
|
| T |
4096 |
tgaatactccgagatgcttgtttggttcggctagtcttggagaaattgcaatactagccggtggttgtgatccatgtggcaacatattgagcgctgctga |
3997 |
T |
|
| Q |
233 |
gctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtc |
332 |
Q |
| |
|
||| || ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
3996 |
gctctataacgcagacactggaaattggaagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtc |
3897 |
T |
|
| Q |
333 |
cttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccag |
432 |
Q |
| |
|
|||||||| || | |||||| |||| ||||| ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| | |
|
|
| T |
3896 |
cttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccg |
3797 |
T |
|
| Q |
433 |
tgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaag |
530 |
Q |
| |
|
| | ||||||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||| |
|
|
| T |
3796 |
tacgaactggagtgtttgagacaccaccttcttttgggtcacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa- |
3698 |
T |
|
| Q |
531 |
gaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtg |
630 |
Q |
| |
|
||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| | |
|
|
| T |
3697 |
-aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgag |
3599 |
T |
|
| Q |
631 |
catgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatg |
730 |
Q |
| |
|
|||| |||||| ||| | ||||| |||||||| || ||||| || || ||| ||||||||||||||||| ||||||||||| ||| | |||||| |
|
|
| T |
3598 |
catgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatg |
3499 |
T |
|
| Q |
731 |
gaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg |
796 |
Q |
| |
|
||||| ||||| |||| || |||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
3498 |
gaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg |
3433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 477 - 796
Target Start/End: Complemental strand, 15899 - 15580
Alignment:
| Q |
477 |
cctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccat |
574 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||| |
|
|
| T |
15899 |
cctttgattgcggttgtaaaaaatgtattggatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcat |
15802 |
T |
|
| Q |
575 |
tggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcat |
674 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| |
|
|
| T |
15801 |
tggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcat |
15702 |
T |
|
| Q |
675 |
tgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagtt |
774 |
Q |
| |
|
|| || ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| || |
|
|
| T |
15701 |
ggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataatt |
15602 |
T |
|
| Q |
775 |
gcattgtgatgggatgttgatg |
796 |
Q |
| |
|
| | |||||||||||||||||| |
|
|
| T |
15601 |
gtactgtgatgggatgttgatg |
15580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 31 - 735
Target Start/End: Original strand, 1293 - 1997
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||| || |
|
|
| T |
1293 |
tggctgttggtactgagcttctagtctttggaaaggaattaatggatcctatcattcataagtatagccttctgacaaatatgtggtcagttggaaatat |
1392 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||| ||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
1393 |
gatgaatactccgagatgcttgtttggttcggctagtcttggagaaattgcaatactagccggtggttgtgatccatgtggcaacatattgagctctgct |
1492 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
1493 |
gagctctataacgcagacactggaaattggaagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatg |
1592 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||| ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
1593 |
tccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccc |
1692 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaa |
528 |
Q |
| |
|
|| | ||||||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||| |
|
|
| T |
1693 |
cgtacgaactggagtgtttgagacaccaccttcttttgggtcacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaa |
1792 |
T |
|
| Q |
529 |
aggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcg |
628 |
Q |
| |
|
| ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
1793 |
a--aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcg |
1890 |
T |
|
| Q |
629 |
tgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaa |
728 |
Q |
| |
|
||||| |||||| ||| | ||||| |||||||| || ||||| || | ||| ||||||||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
1891 |
agcatgcggagatcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaa |
1990 |
T |
|
| Q |
729 |
tggaatc |
735 |
Q |
| |
|
||||||| |
|
|
| T |
1991 |
tggaatc |
1997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 277; Significance: 1e-154; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 31 - 663
Target Start/End: Original strand, 2491 - 3123
Alignment:
| Q |
31 |
tggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagtatgactatctatcaaatacgtggtcaattggaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||| ||| ||| |||||| ||||||| |||||||||| |
|
|
| T |
2491 |
tggctgttggtactgagcttctagtctttggaaaggaattaatggctcctatcattcataagtataactttctgacaaatatgtggtcagttggaaaaat |
2590 |
T |
|
| Q |
131 |
gttgaatactccaagatgctcgttcggttcatccagccttggagaaattgcaatattagcaggtgggtgtgatccatgtggcaacatcttgagctcagct |
230 |
Q |
| |
|
| |||||||||||||||||| ||| ||||| | || |||||||||||||||||| |||| ||||| ||||||||| |||||| ||| |||||||| ||| |
|
|
| T |
2591 |
gatgaatactccaagatgcttgtttggttcggctagtcttggagaaattgcaatactagctggtggttgtgatccacgtggcagcatattgagctctgct |
2690 |
T |
|
| Q |
231 |
gagctttacaactcagacactggaaaatgagaaacccttccagacatgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatg |
330 |
Q |
| |
|
||||| || ||| |||| |||||||| || || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
2691 |
gagctctataacgcagatactggaaattgggagacccttccaaacatgaataaagcaagaaaaatgtgttcaagtgtatttatggatggaaaattttacg |
2790 |
T |
|
| Q |
331 |
tccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttccc |
430 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
2791 |
tccttggtgggatagcagctgacaaaaaaacacaacttacatgtggtgaggagtttgatataaagaataaaaaatggcgtgaaatacccaacatgctccc |
2890 |
T |
|
| Q |
431 |
agtgccaactggagtattggaggcaccaccatcttatggaccacctcctttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaag |
530 |
Q |
| |
|
||| | ||||||||| | ||| ||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| ||| ||||| | || | | |
|
|
| T |
2891 |
agtacgaactggagtgtctgagacaccaccttcttttgggtcacctcccttgattgcagttgtaaaaaatgtattgtatgctgcagattatggaaaacaa |
2990 |
T |
|
| Q |
531 |
gaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtg |
630 |
Q |
| |
|
|||||||| |||||| ||||| |||| |||| |||||| | ||||||||| |||||||||||||| || || |||| ||||||||| |||| ||||| |
|
|
| T |
2991 |
gaagtaaagaagtatgataaagacaacaactattgggtcatcattggaagctttcctgagcaagctacatcggtgaatggttggggactagcatttcgat |
3090 |
T |
|
| Q |
631 |
catgtggagatatgctaatttttctgggaggtc |
663 |
Q |
| |
|
|||||||||||| ||| | ||||| ||||||| |
|
|
| T |
3091 |
catgtggagataaactattatttcttggaggtc |
3123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 17356619 - 17356675
Alignment:
| Q |
275 |
catgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgt |
331 |
Q |
| |
|
|||||||||| | || || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
17356619 |
catgaataaaccgaggaagatgtgttctggtgtattcatggatggaaaattttatgt |
17356675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University