View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6507_high_26 (Length: 252)
Name: NF6507_high_26
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 38772304 - 38772514
Alignment:
| Q |
34 |
atataatattaacatgcaagagctaagttgttcaattcacaacaaaaagatcacaataaaacaatattatactagtctatgagagaatcacaaatttcac |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
38772304 |
atataatattaacatgcaagagctaagttgttcaattcacaacaaaaagatcacaataaaccaatattatactagtgtatgagagagtcacaaatttcac |
38772403 |
T |
|
| Q |
134 |
tcgcgatgaaataatgagaaaatgacgtagtattggacacgttccatacacatacctgtaccagatacataccgggtacaggtacctcatcgttttacat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38772404 |
tcgcgatgaaataatgagaaaatgacgtagtattggacacgttccatacacatacctgtaccagatacataccgggtacaggtacttcatcgttttacat |
38772503 |
T |
|
| Q |
234 |
gtacctatgct |
244 |
Q |
| |
|
||||||||||| |
|
|
| T |
38772504 |
gtacctatgct |
38772514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 32402634 - 32402677
Alignment:
| Q |
43 |
taacatgcaagagctaagttgttcaattcacaacaaaaagatca |
86 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
32402634 |
taacatgaaagagctaaattgttcaattcacaacaaaaacatca |
32402677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University