View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_high_27 (Length: 251)
Name: NF6507_high_27
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 15998532 - 15998353
Alignment:
| Q |
16 |
atgactatgatcaatggggggctttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagatatgaacgatttgcttccatttt |
115 |
Q |
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| T |
15998532 |
atgactatgatcaatggggtgctttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagatatgaacgatttgcttccatttt |
15998433 |
T |
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| Q |
116 |
tgaaacaggtgagaatgattaagcagagaaaactcttcttccaatgtttgctataggtctatttaatgctttacagatac |
195 |
Q |
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| T |
15998432 |
tgaaacaggtgagaatgattaagcagagaaaactcttcttccaatgtttgctataggtctatttaatgctttacagatac |
15998353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 15998208 - 15998150
Alignment:
| Q |
193 |
tacatgttgttttagatttgaatggctgccatctagtgtctttttcttttgatagttac |
251 |
Q |
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| T |
15998208 |
tacatgttgttttagatttgaatggctgccatctagtgtctttttcttttgatagttac |
15998150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 14651769 - 14651838
Alignment:
| Q |
181 |
atgctttacagatacatgttgttttagatttgaatggctgccatctagtgtctttttcttttgatagtta |
250 |
Q |
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| T |
14651769 |
atgctttctagatacatcttgttttagattttaatggcaaccatcgagtctctttttcttttgatagtta |
14651838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 14661560 - 14661629
Alignment:
| Q |
181 |
atgctttacagatacatgttgttttagatttgaatggctgccatctagtgtctttttcttttgatagtta |
250 |
Q |
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| T |
14661560 |
atgctttctagatacatcttgttttagattttaatggcaaccatcgagtctctttttcttttgatagtta |
14661629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 14651587 - 14651641
Alignment:
| Q |
40 |
tgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagata |
94 |
Q |
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| T |
14651587 |
tgtaaagagggtttgtttgaagaagcgtttgttttgctgtcaaaaatggaagata |
14651641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 14661378 - 14661432
Alignment:
| Q |
40 |
tgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagata |
94 |
Q |
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| T |
14661378 |
tgtaaagagggtttgtttgaagaagcgtttgttttgctgtcaaaaatggaagata |
14661432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 17251580 - 17251638
Alignment:
| Q |
34 |
gggctttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaaga |
92 |
Q |
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| T |
17251580 |
gggctttgtaaagagagcttgtttgatgaagcattgaccttgctgtcaaaaatggaaga |
17251638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29949625 - 29949571
Alignment:
| Q |
38 |
tttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaaga |
92 |
Q |
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| T |
29949625 |
tttgtaaagaaggtttatttgacgaggcattgtccttactgtcaaaaatggaaga |
29949571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29953422 - 29953368
Alignment:
| Q |
38 |
tttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaaga |
92 |
Q |
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| T |
29953422 |
tttgtaaagaaggtttatttgacgaggcattgtccttactgtcaaaaatggaaga |
29953368 |
T |
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