View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_high_31 (Length: 240)
Name: NF6507_high_31
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4872785 - 4872958
Alignment:
| Q |
1 |
aactgtagttgctgtgatggtaaaacctaacgttgctagttatcattcaatcattgatgaactatacaaaggtcaaagagttagtaagattgcaaaaatc |
100 |
Q |
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| T |
4872785 |
aactgtagttgctgtgatggtaaaacctaacgttgctaggtatcattcaatcattgatgaactatacaaaggtcaaagagttagtaagattgcaaaaatc |
4872884 |
T |
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| Q |
101 |
atggaaactttgctacttaacaaactttccattggacaaccctattacatttactcttgaactatttaaagttg |
174 |
Q |
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| T |
4872885 |
atggaaactttgctatttaacaaactttccattggacaaccatattacatttactcttgaactatttaaagttg |
4872958 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 4877533 - 4877589
Alignment:
| Q |
168 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcat |
224 |
Q |
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| T |
4877533 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcat |
4877589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
| Q |
160 |
aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca |
210 |
Q |
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| T |
47569542 |
aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca |
47569592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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